View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_10 (Length: 403)
Name: NF13206_low_10
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 29653835 - 29653459
Alignment:
| Q |
19 |
cctgttccataacatatatttgcatgtgcaacaccaagtaagcagggaaggacgtcaggctaactgatctacaaattatagtgtgttttaacatcatcaa |
118 |
Q |
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| T |
29653835 |
cctgttccataacatatctttgcatgtgcaacaccaagtaagcagggaaggacgtcaggctaactgatctacaaattatagtgtgttttaagatcatcaa |
29653736 |
T |
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| Q |
119 |
aacaataatttaatagatgatctcaagagagtggctt-aaaagattcgtttggtttgagaaaatgnnnnnnnnnnnnnnnnnncaaatacaagtctgtta |
217 |
Q |
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| T |
29653735 |
aacaataatttaatagatgatctcaagagagtggctttaaaagattcgtttggtttgagaaaatgttttttattttcatttttcaaatacaagtctgtta |
29653636 |
T |
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| Q |
218 |
acaaaaatagaataaaaataatgtgacaattttgtaatcaacagtgaaaacaaaacattttcccaaaccaaaccagccaagctgacatttttataattga |
317 |
Q |
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| T |
29653635 |
acaaaaatagaatcaaaataatgtgacaattttgtaatcaacagtgaaaacaaaacattttcccaaaccaaagtagccaagctgacatttttataattga |
29653536 |
T |
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| Q |
318 |
aaggcaaaacataacattttgttagagctctaataaacagtaattattcagttatttatcctattgcttacttcatc |
394 |
Q |
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| T |
29653535 |
aaggcaaaacagaacattttgttagagctctaataaacagtaattattcagttattcatcctattgcttacttcatc |
29653459 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 34049049 - 34049143
Alignment:
| Q |
217 |
aacaaaaatagaataaaaataatgtgacaattttgtaatcaacagtgaaaacaaaacattttcccaaaccaaaccagccaagctgacatttttat |
311 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||||||| || ||||||| | |||||| | ||||||||||||| |||||| |
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| T |
34049049 |
aacaaaaatagaataaaattaatgtagcaattttgtaatcaaaagtgaaagcagaacatttgcttaaaccatataagccaagctgacaattttat |
34049143 |
T |
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