View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_17 (Length: 314)
Name: NF13206_low_17
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 39613575 - 39613454
Alignment:
| Q |
177 |
ctagtaactggttcttcgacgaagaagacatggatttcgtttcagacttcaaagatctccccataaaattccaacaaacattaatcccagacttagaaaa |
276 |
Q |
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| T |
39613575 |
ctagtaactggttcttcgacgaagaagacatggatttcgtttcagacttcaaagatctccccataaaattccaacaaacattaatcccagacttagaaaa |
39613476 |
T |
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| Q |
277 |
aatctcaacaacctcaaaagct |
298 |
Q |
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| T |
39613475 |
aatctcaacaacctcaaaagct |
39613454 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39613736 - 39613671
Alignment:
| Q |
16 |
atcaagtaccaataaatccaaatccatttcattggatcttgtgaagaaaataagtggtgctatagc |
81 |
Q |
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| T |
39613736 |
atcaagtaccaataaatccaaatccatttcattggatcttgtgaagcaaataagtggtgctatagc |
39613671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 45044839 - 45044891
Alignment:
| Q |
209 |
gatttcgtttcagacttcaaagatctccccataaaattccaacaaacattaat |
261 |
Q |
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| T |
45044839 |
gattttgtttcagagtttaaagatctacccattaaattccaacaaacactaat |
45044891 |
T |
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