View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_18 (Length: 314)
Name: NF13206_low_18
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 55959830 - 55959551
Alignment:
| Q |
19 |
gaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacgg |
118 |
Q |
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| T |
55959830 |
gaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtat----tgtctttgctccatacgg |
55959735 |
T |
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| Q |
119 |
tgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatga |
218 |
Q |
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| T |
55959734 |
tgattattggagacaaatga-----ggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatga |
55959640 |
T |
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| Q |
219 |
ggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggtaagtacctttg |
307 |
Q |
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| T |
55959639 |
ggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggtaagtacctttg |
55959551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 55956381 - 55956107
Alignment:
| Q |
19 |
gaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacgg |
118 |
Q |
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|||||||| ||||||| |||||||||| |||||| ||||| | |||||||| |||||| | ||||||||||| | ||||||| | |||||||||||| |
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| T |
55956381 |
gaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaac----agatattgtttatgctccatacgg |
55956286 |
T |
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| Q |
119 |
tgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatga |
218 |
Q |
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| T |
55956285 |
tgattattggagac-----agatgaggaaaatatgtacatcacagcttc-----ttagtgctaaaagggttcattatttttcttccattagagaagaaga |
55956196 |
T |
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| Q |
219 |
ggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggtaagtacctttg |
307 |
Q |
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| T |
55956195 |
ggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
55956107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 12426711 - 12426499
Alignment:
| Q |
19 |
gaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtatatattgtctttgctccatacgg |
118 |
Q |
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| T |
12426711 |
gaagacacatgatctttcttttgttcagaggccacaattcctagctccaaatatattaacatatgaatcaaaag----atattatctttgcttcatatgg |
12426616 |
T |
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| Q |
119 |
tgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatga |
218 |
Q |
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| T |
12426615 |
tgattattggagacagatgaga-----aaaatatgtacatcagaacttctta-----gtgctaaaagggtccaatctttttcttccattagagaagatgg |
12426526 |
T |
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| Q |
219 |
ggtagaaaagcttatacaatccattca |
245 |
Q |
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| T |
12426525 |
ggtggaaaagatgatacaattcattca |
12426499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 12266221 - 12266321
Alignment:
| Q |
140 |
atgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatgaggtagaaaagcttatacaatc |
239 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||| |
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| T |
12266221 |
atgagaaaaatatgtacatcagaacttctta-----gtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaatt |
12266315 |
T |
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| Q |
240 |
cattca |
245 |
Q |
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|||||| |
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| T |
12266316 |
cattca |
12266321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 7140713 - 7140757
Alignment:
| Q |
175 |
agtgctaaaagggttcaatctttttcttccattagagaagatgag |
219 |
Q |
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| T |
7140713 |
agtgctaaaagggttcaatctttttcttacattagagaagatgag |
7140757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 7152544 - 7152587
Alignment:
| Q |
175 |
agtgctaaaagggttcaatctttttcttccattagagaagatga |
218 |
Q |
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| T |
7152544 |
agtgctaaaagggttcaatctttttcttatattagagaagatga |
7152587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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