View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13206_low_19 (Length: 314)

Name: NF13206_low_19
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13206_low_19
NF13206_low_19
[»] scaffold0016 (1 HSPs)
scaffold0016 (133-304)||(48392-48563)
[»] chr8 (8 HSPs)
chr8 (136-302)||(19472483-19472645)
chr8 (136-302)||(19543408-19543570)
chr8 (136-302)||(19589126-19589288)
chr8 (148-302)||(3785802-3785953)
chr8 (131-304)||(3479048-3479217)
chr8 (136-280)||(3788500-3788642)
chr8 (150-302)||(31909113-31909262)
chr8 (136-208)||(12062867-12062937)
[»] chr7 (5 HSPs)
chr7 (136-302)||(2576985-2577148)
chr7 (135-220)||(26389240-26389324)
chr7 (233-304)||(26389177-26389247)
chr7 (180-265)||(1715745-1715830)
chr7 (187-304)||(18446587-18446701)
[»] chr6 (5 HSPs)
chr6 (135-304)||(33638777-33638944)
chr6 (136-304)||(21146819-21146987)
chr6 (4-58)||(27659352-27659406)
chr6 (14-51)||(26061720-26061757)
chr6 (14-51)||(26081690-26081727)
[»] chr5 (1 HSPs)
chr5 (136-304)||(4215236-4215401)
[»] chr1 (2 HSPs)
chr1 (139-304)||(16385566-16385728)
chr1 (136-255)||(12685139-12685256)
[»] chr2 (1 HSPs)
chr2 (135-304)||(20509106-20509271)
[»] chr4 (1 HSPs)
chr4 (139-304)||(46432445-46432606)
[»] chr3 (3 HSPs)
chr3 (136-219)||(51306418-51306499)
chr3 (136-217)||(51308882-51308961)
chr3 (136-208)||(20868777-20868847)


Alignment Details
Target: scaffold0016 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 133 - 304
Target Start/End: Complemental strand, 48563 - 48392
Alignment:
Q  133 tgttgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagt 232  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  48563 tgttgttgagaaacatgacatccatgaaagtagagagaagaaagcttagaaaattattgtattgataattgttgaagggatacaaaattgaaaagatagt 48464  T
Q  233 tacaaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48463 tacaaaagaatcaacttgtgacttatatagtgaatacactaatacccttaactaactctaaaatgagtataa 48392  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 19472483 - 19472645
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||  |||||||| | |||| ||| ||||||  ||||||||||||| ||||  |||||    
T  19472483 tgttgagaaacatggcatccatgaaaatagagagaa-aaagcttaagaaattattatattgaaaatagttgaaatgatacaaaagtga-aaga--gttac 19472578  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19472579 aaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgagtat 19472645  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 19543408 - 19543570
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||  |||||||| | |||| ||| ||||||  ||||||||||||| ||||  |||||    
T  19543408 tgttgagaaacatggcatccatgaaaatagagagaa-aaagcttaagaaattattatattgaaaatagttgaaatgatacaaaagtga-aaga--gttac 19543503  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19543504 aaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgagtat 19543570  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 19589288 - 19589126
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||  |||||||| | |||| ||| ||||||  ||||||||||||| ||||  |||||    
T  19589288 tgttgagaaacatggcatccatgaaaatagagagaa-aaagcttaagaaattattatattgaaaatagttgaaatgatacaaaagtga-aaga--gttac 19589193  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19589192 aaaagagtcaacttgtgactgatatagtgactacactagtacccttaactaactctaaaatgagtat 19589126  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 302
Target Start/End: Original strand, 3785802 - 3785953
Alignment:
Q  148 tggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagt--tacaaaagagtca 245  Q
    |||||| ||||||| |||||||||||| |||||| |||||||||| |||||||| ||||||  ||||||| |   |||| | |||  |||||| ||||||    
T  3785802 tggcatccatgaaaatagagagaagaa-gcttaggaaattattgtattgataatagttgaaatgatacaaga---ataaaaaagtgatacaaatgagtca 3785897  T
Q  246 acttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    |||||||||||||||||||| || | |||||||| ||||||||||||||||||||||    
T  3785898 acttgtgacttatatagtgactatagtagtaccc-taactaactctaaaatgagtat 3785953  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 304
Target Start/End: Complemental strand, 3479217 - 3479048
Alignment:
Q  131 tatgttgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagata 230  Q
    ||||||||||||||||||| ||| |||||||  | |||||| ||| |||| ||||||| ||| |||||||| ||||||  ||| ||| ||||| ||||      
T  3479217 tatgttgttgagaaacatgacatccatgaaa--atagagaaaaaaacttaaaaaattactgtattgataatagttgaaaagatgcaacagtga-aagagc 3479121  T
Q  231 gttacaaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    | |||||| ||||||||||||||||||| ||| || || |||| ||||| ||||||||||||||||||||||||    
T  3479120 ggtacaaatgagtcaacttgtgacttatgtagggactaaactaataccc-taactaactctaaaatgagtataa 3479048  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 3788500 - 3788642
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||| |||||||| ||||||  ||||||| | ||| || |  | |||    
T  3788500 tgttgagaaacatggcatccatgaaaatagagagaag-aagtttagaaaattattgtattgataatagttgaaatgatacaagaatga-aaaagtgatac 3788597  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtaccct 280  Q
    ||| | |||||||||||||||||| ||||| || |||||||||||    
T  3788598 aaatgggtcaacttgtgacttatacagtgactatactagtaccct 3788642  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 302
Target Start/End: Original strand, 31909113 - 31909262
Alignment:
Q  150 gcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgata-agatagttacaaaagagtcaact 248  Q
    |||| ||||||| |||||||||  ||||||| |||  |||||| ||||| || ||||||  ||||||||| ||| | ||| || |||||| |||||||||    
T  31909113 gcatccatgaaaatagagagaa--aagcttacaaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaact 31909209  T
Q  249 tgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    ||||||||||||||||| || ||||||| |||||||| ||||||||||||||||    
T  31909210 tgtgacttatatagtgactaaactagta-ccttaacttactctaaaatgagtat 31909262  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 12062937 - 12062867
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaa 208  Q
    |||||||||||||||||| ||||||| ||||||||  ||||||||||||| |||| | ||||| || ||||||    
T  12062937 tgttgagaaacatggcatccatgaaaatagagaga--aaagcttagaaaactattctcttgatgatggttgaa 12062867  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 2577148 - 2576985
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||  ||||||| | ||| ||  | | |||    
T  2577148 tgttgagaaacatggcatccatgaaaatagagagaagaa-gcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaagt-gatac 2577051  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtat 302  Q
    ||| |||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  2577050 aaatgagtcaacttgtgacttatatagtgactatactagtaccc-taactaactctaaaatgagtat 2576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 26389324 - 26389240
Alignment:
Q  135 ttgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaag 220  Q
    ||||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  26389324 ttgttgagaaacatggcatccatgaaaatagagagaaaaaa-cttagaaaattattgtattgataatagttgaagagatacaaaag 26389240  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 26389247 - 26389177
Alignment:
Q  233 tacaaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    ||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||    
T  26389247 tacaaaagagtcaacttgtgacttatatagtgactaaactagtacac-taactaactctaaaatgagtataa 26389177  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 1715745 - 1715830
Alignment:
Q  180 agaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttacaaaagagtcaacttgtgacttatatagtga 265  Q
    ||||| ||||||| |||||||| ||||||  |||| |||||||| |||| || |||||||||||||||| || |||||||||||||    
T  1715745 agaaagttattgtattgataatagttgaaatgatataaaagtgaaaagagagatacaaaagagtcaactagtaacttatatagtga 1715830  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 18446701 - 18446587
Alignment:
Q  187 tattgtgttgataattgttgaagggatacaaaagtgataagatagttacaaaagagtcaacttgtgacttatatagtgaatacactagtacccttaacta 286  Q
    |||||| |||||||| ||||||  ||||||||||||| |||| || |||||| || |||||| |||||||||||||||| |  |||||| | || |||||    
T  18446701 tattgtattgataatagttgaaatgatacaaaagtga-aagaaagatacaaa-gaatcaactagtgacttatatagtgactgaactagtgcact-aacta 18446605  T
Q  287 actctaaaatgagtataa 304  Q
    ||||||||||||||||||    
T  18446604 actctaaaatgagtataa 18446587  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 304
Target Start/End: Original strand, 33638777 - 33638944
Alignment:
Q  135 ttgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagtta 234  Q
    ||||||||||||||||||| ||||||| ||||||||| ||| ||| |||||||||||| ||||||||  |||||| ||||||||||| | |||| || ||    
T  33638777 ttgttgagaaacatggcatccatgaaaatagagagaaaaaa-ctttgaaaattattgtcttgataataattgaagagatacaaaagttaaaagagagata 33638875  T
Q  235 caaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    ||||||||||||||| |||||||||||  || || |||| ||| | |||||||||||||||| |||||||    
T  33638876 caaaagagtcaacttatgacttatataacgattaaactaatacac-taactaactctaaaataagtataa 33638944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 304
Target Start/End: Original strand, 21146819 - 21146987
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||| ||||||||| ||| ||||||| ||||||||| ||| |||||||||||||||| |||| ||| ||||||  ||||||| | ||| |||| || |||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaa-cttagaaaattattgtattgaaaatagttgaaatgatacaagaatgaaaagagaggtac 21146917  T
Q  236 aaaagagtcaacttgtgacttata--tagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    ||| |||||||| |||||||||||   | |||  | |||||||||| ||||||||| ||||||||||||||    
T  21146918 aaatgagtcaacatgtgacttatagtcattgacaaaactagtaccc-taactaactttaaaatgagtataa 21146987  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 27659352 - 27659406
Alignment:
Q  4 aatctagaacactttttcatagccattgacatacaaattgactactttttcagtt 58  Q
    ||||||||  |||||| |||||||||||||| |||||||||||||||||||||||    
T  27659352 aatctagactacttttacatagccattgacagacaaattgactactttttcagtt 27659406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26061757 - 26061720
Alignment:
Q  14 actttttcatagccattgacatacaaattgactacttt 51  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  26061757 actttttcatagcctttgacagacaaattgactacttt 26061720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26081727 - 26081690
Alignment:
Q  14 actttttcatagccattgacatacaaattgactacttt 51  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  26081727 actttttcatagcctttgacagacaaattgactacttt 26081690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 136 - 304
Target Start/End: Complemental strand, 4215401 - 4215236
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||||||| | ||||||| |||||||||||| ||||||| |||||||| ||||||  |||| |||||||| |||| || |||    
T  4215401 tgttgagaaacatggcatccatgaaaatggagagaa-aaagcttagaaagttattgtattgataatagttgaaatgatataaaagtgaaaagagagatac 4215303  T
Q  236 aaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    |||||||||||||  ||||||||||||||| |  |||||| | | ||||||||||| ||||||||||||    
T  4215302 aaaagagtcaactaatgacttatatagtgactcaactagtgcac-taactaactct-aaatgagtataa 4215236  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 16385728 - 16385566
Alignment:
Q  139 tgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttacaaa 238  Q
    ||||||||||||||| ||||||| |||| |||| |||||||| ||| ||||||| ||||| || |   ||  ||||||||| ||| |||| |  ||||||    
T  16385728 tgagaaacatggcatccatgaaaatagaaagaa-aaagcttacaaagttattgtattgattatagggaaaatgatacaaaaatga-aagagatgtacaaa 16385631  T
Q  239 agagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
     |||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||    
T  16385630 tgagtcaacttgtgacttatacagtgactaaactagtaccc-taactaactctaaaatgagtataa 16385566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 255
Target Start/End: Complemental strand, 12685256 - 12685139
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttac 235  Q
    |||||||||||||||||| ||| ||| ||||||| | || ||||||||| ||||| | |||||||| ||  ||  |||| |||||| | |||| || |||    
T  12685256 tgttgagaaacatggcatccataaaaatagagagga-aaggcttagaaagttattatattgataatagtgaaaatgatataaaagtta-aagagagatac 12685159  T
Q  236 aaaagagtcaacttgtgact 255  Q
    ||||||||||||| ||||||    
T  12685158 aaaagagtcaactagtgact 12685139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 304
Target Start/End: Original strand, 20509106 - 20509271
Alignment:
Q  135 ttgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagtta 234  Q
    ||||||||||||||| ||| ||||||| |||||||||  || | | |||||||||| | | |||| | ||||||   |||||||| ||| |||| || ||    
T  20509106 ttgttgagaaacatgacatccatgaaaatagagagaaacaa-cgtcgaaaattattatatcgatactagttgaaa--atacaaaaatga-aagagagata 20509201  T
Q  235 caaaagagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
     ||| |||||||||||| ||||||||| ||| || |||||||||| ||||||||||||||||||||||||    
T  20509202 taaatgagtcaacttgtaacttatatattgactaaactagtacccctaactaactctaaaatgagtataa 20509271  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 304
Target Start/End: Complemental strand, 46432606 - 46432445
Alignment:
Q  139 tgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaagtgataagatagttacaaa 238  Q
    ||||||||||| ||| ||||||| ||||||| | |||||||| ||||||||||| |||||||| ||  ||  ||||||||||||| ||||  | || |||    
T  46432606 tgagaaacatg-catccatgaaaatagagagga-aaagcttacaaaattattgtattgataatagtaaaaatgatacaaaagtga-aagagggatataaa 46432510  T
Q  239 agagtcaacttgtgacttatatagtgaatacactagtacccttaactaactctaaaatgagtataa 304  Q
    |||||||||| ||||||| ||  |||| || | |||| | | ||||||||||||||||||||||||    
T  46432509 agagtcaactagtgacttttacggtgactaaattagtgcac-taactaactctaaaatgagtataa 46432445  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 51306499 - 51306418
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaaaa 219  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||| |||||||||| |||||||| ||| ||  |||||||||    
T  51306499 tgttgagaaacatgacatccatgaaaatagagagaa-aaagcttag-aaattattgtattgataatagttaaaatgatacaaaa 51306418  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 51308961 - 51308882
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaagggatacaa 217  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||  |||||||||| |||||||| ||||||  |||||||    
T  51308961 tgttgagaaacatgacatccatgaaaatagagagaa-aaagctta-taaattattgtattgataatagttgaaatgatacaa 51308882  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 20868847 - 20868777
Alignment:
Q  136 tgttgagaaacatggcattcatgaaagtagagagaagaaagcttagaaaattattgtgttgataattgttgaa 208  Q
    ||||| |||||||||||| |||||||  ||||||||  |||||||||||| |||||| ||||| || ||||||    
T  20868847 tgttgggaaacatggcatccatgaaaagagagagaa--aagcttagaaaactattgtattgatgatagttgaa 20868777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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