View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13206_low_2 (Length: 748)

Name: NF13206_low_2
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13206_low_2
NF13206_low_2
[»] chr4 (12 HSPs)
chr4 (19-736)||(29676415-29677134)
chr4 (18-291)||(28125180-28125456)
chr4 (19-277)||(20211310-20211570)
chr4 (457-674)||(35968306-35968523)
chr4 (401-669)||(36636764-36637032)
chr4 (457-551)||(35974134-35974228)
chr4 (536-664)||(38863107-38863235)
chr4 (487-620)||(36668513-36668646)
chr4 (483-539)||(36607460-36607516)
chr4 (506-669)||(36909544-36909707)
chr4 (78-160)||(36643124-36643206)
chr4 (401-539)||(36643459-36643597)
[»] chr5 (2 HSPs)
chr5 (457-674)||(19658216-19658433)
chr5 (457-674)||(19675055-19675272)
[»] chr1 (2 HSPs)
chr1 (457-669)||(42602757-42602969)
chr1 (19-267)||(42602316-42602564)
[»] chr8 (1 HSPs)
chr8 (566-702)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (588-664)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (606-659)||(43864074-43864127)
chr2 (606-659)||(43875241-43875294)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 19 - 736
Target Start/End: Complemental strand, 29677134 - 29676415
Alignment:
Q  19 acaaagactc-ggagtagataactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggatccg 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29677134 acaaagactcaggagtagataactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggatccg 29677035  T
Q  118 tgcatccttaaccgtacaatcatgaattgccaaactattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggcgaaa 217  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29677034 tgcatccttaaccgtacaatcacgaactgccaaactattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggcgaaa 29676935  T
Q  218 ctcgtcagatccaaattggtcaataccggcaaattcaaagcttttggaaataccgttttttgattgttataataacgacctctatggtaaactaaaagct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29676934 ctcgtcagatccaaattggtcaataccggcaaattcaaagcttttggaaataccgttttttgattgttataataaagacctctatggtaaactaaaagct 29676835  T
Q  318 taagagatgtaagaaactgacacgaagaaacatgtgggaaaatgagagcactatcagcacacacagagattcctaattcaagagtatt-ataggagcgaa 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||    
T  29676834 taagagatgtaagaaactgacacgaagaaacatgtgggaaaatgagagcactatcagcacacacagagattcctaattcaagagttgggatatgagcgaa 29676735  T
Q  417 catattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676734 catattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaat 29676635  T
Q  517 tttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggac 616  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676634 tttagagacgaatttggaaaattgtttaagagtggcaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggac 29676535  T
Q  617 aaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagttgcttagcctgtcttcaccttctttgt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29676534 aaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaaggcaatccgataagtcgcttagcctgtcttcaccttctttgt 29676435  T
Q  717 tttcttcctcacagtgcctt 736  Q
    ||||||||||||||||||||    
T  29676434 tttcttcctcacagtgcctt 29676415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 28125456 - 28125180
Alignment:
Q  18 aacaaagactcggagtagataactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggatccg 117  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||| | | ||||| || |||||  |||||||||||||||||||||||||||||||      
T  28125456 aacaaagactcggaccagata-ctcaattttggcaaagtcggatgaatcattatgcatagctaaaacgacaagtgtctcgcttgatatgtttaggatcta 28125358  T
Q  118 tgcatccttaaccgtacaatcatgaattgccaaa-ctattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggcgaa 216  Q
    || ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28125357 tgtatccttaaccgtacaattacgaattgccaaaactattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggtgaa 28125258  T
Q  217 actcgtcagatccaaattg---gtcaataccggcaaattcaaagcttttggaaataccgttttttgattgttataata 291  Q
    |||||||||||||||||||   ||| |||| | ||||||||| | |||||||||||||||||||| || ||| |||||    
T  28125257 actcgtcagatccaaattggtcgtcgatacggacaaattcaatgattttggaaataccgttttttcatcgttttaata 28125180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 20211310 - 20211570
Alignment:
Q  19 acaaagactcggagtagataactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggatccgt 118  Q
    |||||||||||||  ||||||||||||||| |||||||||||||| | | ||||| || ||||| |||||||||||| ||||||||| ||||||||  ||    
T  20211310 acaaagactcggaccagataactcaattttggcaaagtcggatgaatcattatgcatagctaaaatgacaagtgtcttgcttgatatatttaggatatgt 20211409  T
Q  119 gcatccttaaccgtacaatcatgaattgccaaactattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggcgaaac 218  Q
    | ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  20211410 gtatccttaaccgtacaattatgaattgccaaactattaaacctgccaaaggccgaaaagggctctgcataatcatttccatcac-gttaaaggcgaaac 20211508  T
Q  219 tcgtcagatccaaattg---gtcaataccggcaaattcaaagcttttggaaataccgttttt 277  Q
    ||||||||| |||||||   ||| |||||| ||||||||| | |||||||||||| ||||||    
T  20211509 tcgtcagattcaaattggctgtcgataccgacaaattcaatgattttggaaatactgttttt 20211570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 457 - 674
Target Start/End: Complemental strand, 35968523 - 35968306
Alignment:
Q  457 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 556  Q
    |||| |||||| || |||||||||| |||||| | | ||||||||||||||||||||||| ||||| |||||  ||| |||||| ||  |||||| |||     
T  35968523 accatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaa 35968424  T
Q  557 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 656  Q
     ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| ||||| | || ||| || |    
T  35968423 cttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatg 35968324  T
Q  657 acaaaatgcgaagtagaa 674  Q
    |||||||| |||| ||||    
T  35968323 acaaaatgtgaaggagaa 35968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 401 - 669
Target Start/End: Original strand, 36636764 - 36637032
Alignment:
Q  401 gtattataggagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtat 500  Q
    ||||||| ||||  |||||| |||||||||||||||||||| |  || || ||   |||| |||||| ||||||||||||  |||||||||| |||||||    
T  36636764 gtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcgtgcagtgcagttgaggtat 36636863  T
Q  501 cacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatg 600  Q
    ||||||||||||| || ||||| || ||  ||| |||||| |||| ||||| |||| |||| || | ||| ||||||||||| ||| |||||||||||||    
T  36636864 cacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatg 36636963  T
Q  601 ttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 669  Q
    |    ||||||| |||||||  ||||||   || || ||||||| ||||||||| ||||||||| ||||    
T  36636964 tctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaag 36637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 35974228 - 35974134
Alignment:
Q  457 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgg 551  Q
    |||| |||||| || ||||| |||| |||||||| | ||||||||||||||||||||||| ||| | |||||| ||| |||||| ||| ||||||    
T  35974228 accatgacggttaatatcaatagcttgcagtgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgcttacgagtgg 35974134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 664
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  536 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 635  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  636 cgtgtttggcattcaaaaacgacaaaatg 664  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 620
Target Start/End: Original strand, 36668513 - 36668646
Alignment:
Q  487 tgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggata 586  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||| | | |||||| |||| |  || |||| | ||||  ||||| ||||| ||||  |||    
T  36668513 tgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttgtaaattgcttaacataggaaaatctagaagaatgcaatataagggttgaaata 36668612  T
Q  587 tgtttccagagatgttcatatctcttggacaaaa 620  Q
     ||||||||||||||||  ||||||| |||||||    
T  36668613 cgtttccagagatgttcccatctctttgacaaaa 36668646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 36607460 - 36607516
Alignment:
Q  483 gcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaatt 539  Q
    |||||||| | ||||||||||||||||||||||| || || |||||||||| |||||    
T  36607460 gcagtgcaattgaggtatcacgaagagtcaaaatatttgacacgaatttggtaaatt 36607516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 669
Target Start/End: Complemental strand, 36909707 - 36909544
Alignment:
Q  506 agagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcat 605  Q
    ||||||||||| ||||| |||||| | | |||||| |||| ||||| |||| ||||||  || || ||||||||||| ||  | |||||||||||| |      
T  36909707 agagtcaaaatcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtcccc 36909608  T
Q  606 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 669  Q
    |||||||||| ||||  ||||||   ||| | ||||||| |||||| || || |||||| ||||    
T  36909607 atctcttggaaaaaacacaagttccgacggcatgtttggtattcaagaatgataaaatgtgaag 36909544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 36643124 - 36643206
Alignment:
Q  78 ctaaattgacaagtgtctcgcttgatatgtttaggatccgtgcatccttaaccgtacaatcatgaattgccaaactattcaac 160  Q
    ||||||||||||||||||| ||||||||||| |||||  | |||||||| | | |||||  | ||||  ||||||||||||||    
T  36643124 ctaaattgacaagtgtctcacttgatatgttgaggatttgagcatcctttatcttacaacaacgaatgcccaaactattcaac 36643206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 539
Target Start/End: Original strand, 36643459 - 36643597
Alignment:
Q  401 gtattataggagcgaacatattttaaaatctttttaaggagatacggttctatcaaaccaggacggtgaagatcaagagctagcagtgcagtcgaggtat 500  Q
    ||||||| ||||| || ||| |||||||||||||||||||| |  ||||| ||   |||| |||| | |||||  |||||| |||| | ||| ||| |||    
T  36643459 gtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagcttgcagagaagttgagctat 36643558  T
Q  501 cacgaagagtcaaaattttagagacgaatttggaaaatt 539  Q
      |||||||||||||| ||||| |||||| ||| |||||    
T  36643559 tgcgaagagtcaaaatgttagacacgaatatggcaaatt 36643597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 674
Target Start/End: Original strand, 19658216 - 19658433
Alignment:
Q  457 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 556  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  ||||||||||||||||| || ||||||| ||||    
T  19658216 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaat 19658315  T
Q  557 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 656  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19658316 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19658415  T
Q  657 acaaaatgcgaagtagaa 674  Q
    |||||||| |||| ||||    
T  19658416 acaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 457 - 674
Target Start/End: Original strand, 19675055 - 19675272
Alignment:
Q  457 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 556  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  |||||||| |||||||| || ||||||| ||||    
T  19675055 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaat 19675154  T
Q  557 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 656  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19675155 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19675254  T
Q  657 acaaaatgcgaagtagaa 674  Q
    |||||||| |||| ||||    
T  19675255 acaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 669
Target Start/End: Original strand, 42602757 - 42602969
Alignment:
Q  457 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 556  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||| || || | |||||||||     
T  42602757 accatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaag 42602856  T
Q  557 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 656  Q
     |||| |  | ||| |||||||| || ||| ||||||| | | | |   |||| |||||||| |||||||||||||||  ||||||||  || | ||| |    
T  42602857 tttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatg 42602956  T
Q  657 acaaaatgcgaag 669  Q
    |||||||| ||||    
T  42602957 acaaaatgtgaag 42602969  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 42602316 - 42602564
Alignment:
Q  19 acaaagactcggagtagataactcaatttttgcaaagtcggatgacttactatgcgtatctaaattgacaagtgtctcgcttgatatgtttaggatccgt 118  Q
    |||||| || |||| ||||||||| ||||| | ||||   |||||  || ||||| || ||||||||||||||||||| ||||||||  | |||||  ||    
T  42602316 acaaaggcttggagcagataactcgattttggtaaaggaagatgaaatattatgcatagctaaattgacaagtgtctcacttgatatcctgaggatttgt 42602415  T
Q  119 gcatccttaaccgtacaatcatgaattgccaaactattcaacctgccaaaggccgaaaagggctctgcataatcatttccatcactgctaaaggcgaaac 218  Q
    ||||| || |||||||||     |||  |||||||||||||||||  ||||| | ||||||| || |||  | ||||| |||||| || |||||| |||     
T  42602416 gcatcttttaccgtacaactgctaatgaccaaactattcaacctggtaaaggtcaaaaagggttcagcacgaccattttcatcaccgcaaaaggcaaaat 42602515  T
Q  219 tcgtcagatccaaattggtcaataccggcaaattcaaagcttttggaaa 267  Q
    | || ||||||||  |||||||| ||||||||||||||| |||||||||    
T  42602516 ttgtgagatccaagctggtcaatgccggcaaattcaaagattttggaaa 42602564  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 566 - 702
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  566 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 665  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  666 gaagtagaaggcaatccgataagttgcttagcctgtc 702  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 664
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  588 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 664  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  606 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 659  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 659
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  606 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 659  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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