View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_25 (Length: 245)
Name: NF13206_low_25
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 48883377 - 48883592
Alignment:
| Q |
12 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtctgccttatcatggatttgcatggacacttgtga |
111 |
Q |
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| T |
48883377 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatatgcatggacacttgtga |
48883476 |
T |
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| Q |
112 |
agccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctc |
211 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48883477 |
aaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctc |
48883576 |
T |
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| Q |
212 |
tggtgatggagtagtt |
227 |
Q |
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|| ||||||||||||| |
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| T |
48883577 |
tgatgatggagtagtt |
48883592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 48478906 - 48478691
Alignment:
| Q |
12 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtctgccttatcatggatttgcatggacacttgtga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48478906 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtga |
48478807 |
T |
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| Q |
112 |
agccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctc |
211 |
Q |
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| T |
48478806 |
aaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctt |
48478707 |
T |
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| Q |
212 |
tggtgatggagtagtt |
227 |
Q |
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|||||||||||||||| |
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| T |
48478706 |
tggtgatggagtagtt |
48478691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 48470544 - 48470329
Alignment:
| Q |
12 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtctgccttatcatggatttgcatggacacttgtga |
111 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
48470544 |
aatactgattcaggcattaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatatgcatggacacttgtga |
48470445 |
T |
|
| Q |
112 |
agccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctc |
211 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| || ||||||||| |||| |
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| T |
48470444 |
aaccaggtgaaggtggtgttggtagaccaacttctggtcctgcttttacaatggatggttcaatgtcttataagtttataaaaagttacattagaggctt |
48470345 |
T |
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| Q |
212 |
tggtgatggagtagtt |
227 |
Q |
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|||||||||||||||| |
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| T |
48470344 |
tggtgatggagtagtt |
48470329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 48487375 - 48487160
Alignment:
| Q |
12 |
aatactgattcaggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtctgccttatcatggatttgcatggacacttgtga |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
48487375 |
aatactgattcaggtattaaagagtggagaaaaagaggattttcttctcacaaacttgtaattggtttgccttatcatggatttgcttggacacttgtga |
48487276 |
T |
|
| Q |
112 |
agccagaagaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctc |
211 |
Q |
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| |||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| || ||| ||||| ||| |
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| T |
48487275 |
aaccaggtgaaggtggtgttggtaaaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagttatattagaagctt |
48487176 |
T |
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| Q |
212 |
tggtgatggagtagtt |
227 |
Q |
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|||||| ||||||||| |
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| T |
48487175 |
tggtgacggagtagtt |
48487160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 38816834 - 38816918
Alignment:
| Q |
143 |
ttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctctggtgatggagtagtt |
227 |
Q |
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||||||||||||| ||||||||||||||||| ||| |||||||| || | || ||||||||| |||||||||||||||||||| |
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| T |
38816834 |
ttctggtcctgcttttacaatggatggttcagtggcttataagtatatgaaaagttacattagaagctctggtgatggagtagtt |
38816918 |
T |
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