View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_3 (Length: 739)
Name: NF13206_low_3
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Complemental strand, 53597471 - 53596923
Alignment:
| Q |
14 |
attatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgt |
113 |
Q |
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| T |
53597471 |
attatactcagattgtgtggaaaagtactagaagaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgt |
53597372 |
T |
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| Q |
114 |
tggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttctttagtcctttt |
213 |
Q |
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| T |
53597371 |
tggtaattatgttggagaacgaccatattaatttaattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttatttagtcctttt |
53597272 |
T |
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| Q |
214 |
aaactagcaatatgagtatattgtatgttggtataaattgagcaaatgtgtatggttgagatttgtgaatagttattaaattgcctttgatatctgatta |
313 |
Q |
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| T |
53597271 |
aaactagcaatatgagtatattgtatgttggtataaattgagcgaatgtgtatggttgtgacttgtgaatagttattaaattgcatttgatatctgatta |
53597172 |
T |
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| Q |
314 |
gtgtttgggacaataagtcaaagtaaacaagagaggatatatatgccaatttgtgtgttgatttgtatgta----cttg--tatgcagttatgtatattc |
407 |
Q |
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| T |
53597171 |
gtgtttgggacaataagtcaaagtaaacaagagagggtatatatgccaatttgtgtgttgatttgtatgtatgtacttgcgtatccagttatgtatattc |
53597072 |
T |
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| Q |
408 |
tggtaacagagaatgtgaatttcacaaacatgtatattacttgagttattatggatggtaagagggtggaaacaccaattcatctgttacttcaatctga |
507 |
Q |
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| T |
53597071 |
tggtaacagagaatgtgaatttcacaaacatgtatattacttgagttattatggatggtaagagggtggaaacaccaattcatctgtttcttcaatgtga |
53596972 |
T |
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| Q |
508 |
atttggtttgattatttggta----tatagtgatttgatggttgggttt |
552 |
Q |
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| T |
53596971 |
atttggtttgattatttggtatatatatagtgatctgatggttgggttt |
53596923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 558 - 721
Target Start/End: Complemental strand, 53596891 - 53596728
Alignment:
| Q |
558 |
acattgtttgaatgcttaagtgggctaacctttacgaaaaattaaggaaggtggtttcgttgatttagaatacaacgttgtggcttcttaggaaaacaat |
657 |
Q |
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| T |
53596891 |
acattgtttgaatgcttaagtgggctaacctttacgaaaaattaaggaaggtggtttcgttgatttagaatacaacgttgtggcttcttaggaaaacaat |
53596792 |
T |
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| Q |
658 |
gaatgacttcattttctagaataaggtgcatgatcttatgaaagtgtttgatgaatttaaagaa |
721 |
Q |
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| T |
53596791 |
gaatgacttcattttctagaataaggtgcatgatcttatgaaagtgtttgatgaatttaaagaa |
53596728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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