View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13206_low_30 (Length: 236)

Name: NF13206_low_30
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13206_low_30
NF13206_low_30
[»] chr3 (3 HSPs)
chr3 (1-87)||(39488748-39488836)
chr3 (118-159)||(36278125-36278166)
chr3 (117-157)||(42134944-42134984)
[»] chr2 (1 HSPs)
chr2 (101-220)||(29150445-29150565)
[»] chr7 (1 HSPs)
chr7 (101-186)||(42675286-42675370)
[»] chr4 (1 HSPs)
chr4 (105-165)||(31985045-31985105)
[»] chr8 (2 HSPs)
chr8 (105-168)||(2543089-2543152)
chr8 (118-169)||(14478122-14478173)
[»] chr5 (1 HSPs)
chr5 (101-150)||(38893819-38893868)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39488748 - 39488836
Alignment:
Q  1 aaagaagtgtatattgtttacaaaactgaa--cgtgtgagatttcttgtgtttcgtatatgccgtttgtggtactaaatagcagtactc 87  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  39488748 aaagaagtgtatattgtttacaaaactgaatgcgcgtgagatttcttgtgtttcgtatatgccgtttgtcgtactaaacagcagtactc 39488836  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 36278125 - 36278166
Alignment:
Q  118 aaaagatatccacttatttgataaatgtatttcatcttattt 159  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  36278125 aaaagatattcacttatttgatagatgtatttcatcttattt 36278166  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 42134984 - 42134944
Alignment:
Q  117 caaaagatatccacttatttgataaatgtatttcatcttat 157  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  42134984 caaaagatatccatttatttgatagatgtacttcatcttat 42134944  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 29150445 - 29150565
Alignment:
Q  101 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacacttccaatcttctaagcaacta-aaagagagtttgg 199  Q
    ||||||||| ||||||  |||||||||||||| ||||||| ||||||||| ||||||||| |||||| | ||||  ||| |||||| |||||||| || |    
T  29150445 gtagaaataggaaagcttaaagatatccacttgtttgatagatgtatttcgtcttattttgacactttcgatctcttaaacaactacaaagagagctttg 29150544  T
Q  200 ttaacaataaaaattgtcatt 220  Q
     ||||| ||||| || |||||    
T  29150545 ctaacagtaaaatttttcatt 29150565  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 42675370 - 42675286
Alignment:
Q  101 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacacttccaatcttctaagcaacta 186  Q
    |||||||| | |||| ||||||||||| |||| ||||||| | |||||| |||||||||| |||||||| |||  |||||||||||    
T  42675370 gtagaaattaaaaagtcaaaagatatctacttgtttgatagaagtatttgatcttattttgacacttccgatc-gctaagcaacta 42675286  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 31985045 - 31985105
Alignment:
Q  105 aaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacac 165  Q
    |||||||||||  |||||| ||| |||||||||||| ||||||||  ||||||||||||||    
T  31985045 aaataagaaagtaaaaagaaatcaacttatttgatagatgtattttgtcttattttcacac 31985105  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 2543152 - 2543089
Alignment:
Q  105 aaataagaaagccaaaagatatccacttatttgataaatgtatttcatcttattttcacacttc 168  Q
    ||||||||||| ||||||| ||| |||| ||||||| ||||||||  ||||||||| |||||||    
T  2543152 aaataagaaagtcaaaagacatctacttgtttgatagatgtattttgtcttattttgacacttc 2543089  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 14478122 - 14478173
Alignment:
Q  118 aaaagatatccacttatttgataaatgtatttcatcttattttcacacttcc 169  Q
    |||||||||||| ||||||||||||||||| || ||||||||| | ||||||    
T  14478122 aaaagatatccatttatttgataaatgtatctcgtcttattttgatacttcc 14478173  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 38893868 - 38893819
Alignment:
Q  101 gtagaaataagaaagccaaaagatatccacttatttgataaatgtatttc 150  Q
    ||||||||  ||||||||||| ||| |||||| |||||||||||||||||    
T  38893868 gtagaaatgggaaagccaaaaaatacccacttgtttgataaatgtatttc 38893819  T

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