View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_4 (Length: 688)
Name: NF13206_low_4
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 9723338 - 9723664
Alignment:
| Q |
16 |
atgaaagacacttaaacaccttcatgcgctt--attaaaccata----gtttaacatgagtctaacaaacggcgctagattataaataatgaatatcaaa |
109 |
Q |
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| T |
9723338 |
atgaaagacacttaaacaccttcatgcgcttttattaaaccatatatagtttaacacgagtctaacaaacggcgctagattataaataatgaatatcaaa |
9723437 |
T |
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| Q |
110 |
gcaacattgtgttcattcaggatctttgatgtgctctggtggttgtgggaaagaaaaatctaataatcatttgttcttggaatgtgaannnnnnnnggaa |
209 |
Q |
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| T |
9723438 |
gcaacattgtgttcattcaggatctttgatgtgctctggtggttgtgggaaagaaaaatctattaatcatttgttcttggaatgtgaattttttttggaa |
9723537 |
T |
|
| Q |
210 |
gtatttggacttgtgttctacattggccggtgatttattatgttcttccgattgatgtttgcacgcatgccatgcaattttaggggtctcgtttgttcaa |
309 |
Q |
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| T |
9723538 |
gaatttggacttgtgttctaaattggccggttatttattatgttcttccgattgatgtttgcacgcatgccatgcaattttaggggtctcgtttgttcaa |
9723637 |
T |
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| Q |
310 |
gagggatatttttcattgatttcaagt |
336 |
Q |
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| T |
9723638 |
gagggatatttgtcattgatttcaagt |
9723664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 361 - 670
Target Start/End: Original strand, 9723666 - 9723978
Alignment:
| Q |
361 |
catttggaaggagtgaaactctcatannnnnnncaacaaagaattgtcacttgatcatttgtttgataagatcaagcttcattcttggtggcaattgaag |
460 |
Q |
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| T |
9723666 |
catttggaaggagtgaaactctcat--ttttttcaacaaagaattgtcacttgatcatttgtttgataagatcaagcttcattcttggtggcaattgaag |
9723763 |
T |
|
| Q |
461 |
gctcaaaatccaacatannnnnnnnnnnnnnnnnnnnnatggtctaatccgacaacttatataagttactcgatatcttaaagtcgttttg--------- |
551 |
Q |
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| T |
9723764 |
gctcaaaacccaacatattttttggattttaattttttatggtctaatccgacaacttgtataggttacttaatatcttaaagtcgttttgttgagtccg |
9723863 |
T |
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| Q |
552 |
-ttttgaggcacaccttatgcttatgcttgaataattttcatcattttttaatatatttctagcttctt--nnnnnnnnntgtagcaactagcaagagtc |
648 |
Q |
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| T |
9723864 |
tttttgaggcacac------cttatgctagaataattttcatcattttttaatatatttctagcttcttaaaaaaaaaaatgtagcaactagcaatagtc |
9723957 |
T |
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| Q |
649 |
acataaaaagtattggataata |
670 |
Q |
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| T |
9723958 |
acat-aaaagtattggataata |
9723978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 28584769 - 28584826
Alignment:
| Q |
394 |
caacaaagaattgtcacttgatcatttgtttgataagatcaagcttcattcttggtgg |
451 |
Q |
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| T |
28584769 |
caacaatgaattgtatcttgatcactttcttgataagattaagcttcattcttggtgg |
28584826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 3651541 - 3651489
Alignment:
| Q |
212 |
atttggacttgtgttctacattggccggtgatttattatgttcttccgattga |
264 |
Q |
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| T |
3651541 |
atttggacatgtgttgtacattggtcggggatttattatgttccttcgattga |
3651489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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