View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13206_low_6 (Length: 474)
Name: NF13206_low_6
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Complemental strand, 42875815 - 42875367
Alignment:
| Q |
11 |
caaaggtaaaggcagcagcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccg |
110 |
Q |
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| T |
42875815 |
caaaggtaaaggcagcagcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccg |
42875716 |
T |
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| Q |
111 |
cttgtgaaagggcgtatcgatatacctgatccttctcctcctttgacgtgtatcgaaaatttatatgccgtgggatttgtttgcaaaccgaagcagaagg |
210 |
Q |
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| T |
42875715 |
cttgtgaaagggcgtatcgatatacctgatccttctcctcctttgacgtgtatcgaaaatttatacgccgtgggatttgtttgcaaaccgaagcagaagg |
42875616 |
T |
|
| Q |
211 |
tgaccgctcgtcgttcaaataaacacaattttcgagttgtgatcatcaagtcctttttagtaaggatgtccgagatcaaagttgatgttttctcctcaaa |
310 |
Q |
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| T |
42875615 |
tgaccgctcgtcgttcaaataaacacaattttcgagttgtgatcatcaagtcctttttagtaagggtgtccgagatcaaagttgatgttttctcctcaaa |
42875516 |
T |
|
| Q |
311 |
gactgggcaatggaatcacattgttatgaaaattccgaagggcttcgcttttgctcctcattggcttctaagtttttcatactgtggaaagctgtatttc |
410 |
Q |
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| T |
42875515 |
gacagggcaatggaatcacattgttatgaaaattccgaagggcttcgcttttgctcctcattggcttctgagtttttcatactgtggaaagctgtatttc |
42875416 |
T |
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| Q |
411 |
atggggagggcaaacatttttgtgtttgatccttattcaagaaaaaggt |
459 |
Q |
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| T |
42875415 |
atggggagggcaaacatttttgtgtttgatccttattcaagaaaaaggt |
42875367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 42751144 - 42751258
Alignment:
| Q |
27 |
agcatatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaagggcgta |
126 |
Q |
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|||||||| ||||||||||| || ||||||||||||| ||| || ||| |||||| || || || |||||||||||||||||| || || |||| | ||| |
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| T |
42751144 |
agcatatgtggttgttccaatggtttattcttgtgttctaagaatcgggacacatgtgctaccgtctattatgtttatgatccactcgttaaagagtgta |
42751243 |
T |
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| Q |
127 |
tcgatatacctgatc |
141 |
Q |
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| T |
42751244 |
tccatatacctgatc |
42751258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 240 - 446
Target Start/End: Complemental strand, 1050089 - 1049883
Alignment:
| Q |
240 |
tttcgagttgtgatcatcaagtcctttttagtaaggatgtccgagatcaaagttgatgttttctcctcaaagactgggcaatggaatcacattgttatga |
339 |
Q |
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||||||||||||||||| |||||||| || |||| ||| |||||| | | |||||||||||||| |||| ||| |||||| | | ||||||||| |
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| T |
1050089 |
tttcgagttgtgatcattaagtccttcataaaaaggttgttcgagatggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatga |
1049990 |
T |
|
| Q |
340 |
aaattccgaagggcttcgcttttgctcctcattggcttctaagtttttcatactgtggaaagctgtatttcatggggagggcaaacatttttgtgtttga |
439 |
Q |
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| T |
1049989 |
ttattccggatggattcgcttttgctcctcattggctactaagtttttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttga |
1049890 |
T |
|
| Q |
440 |
tccttat |
446 |
Q |
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||||||| |
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| T |
1049889 |
tccttat |
1049883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 1050295 - 1050207
Alignment:
| Q |
31 |
tatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaa |
119 |
Q |
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||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||| || ||||||| |||| ||||| ||| ||||| |
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| T |
1050295 |
tatgcggttgttccaacggtttattcttgtgttgtaagaatcgatacacctatggtatcgactattatatttacgatccacttatgaaa |
1050207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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