View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13206_low_9 (Length: 453)
Name: NF13206_low_9
Description: NF13206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13206_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 27475988 - 27476385
Alignment:
| Q |
9 |
agcatagggataacgtagcatgtggtgttgtcttagagtgtaccctacctt-cttaaacaaatgttcgatacaaagcttccacttgctaccaaataagat |
107 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||||||| | ||||||| ||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
27475988 |
agcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaa-tgtccaatacaaagcttccacttgctaaaaaataagat |
27476086 |
T |
|
| Q |
108 |
gtgatcaagtatagcctcatatttgttcatgatttaattagcgtcactaattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27476087 |
gtgatcaagtatagcctcatatttgttcatgatttaattagcgtcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatg |
27476186 |
T |
|
| Q |
208 |
tgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatga |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27476187 |
tgaagctggtatgtgactctaaggacatggataacaatagatcaacataaaccattctacatgtctgtgg-ttgtactttcaagtctatcaattatatga |
27476285 |
T |
|
| Q |
308 |
cgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcatttctgagacaacaccatgtgatctttcatatgctcttg |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27476286 |
tgcttctgctcaagaattatgcattatctatctactacaccatttgaagtatatccattcatttc-gagacaacaccatgtgatctttcatatgctcttg |
27476384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 27468755 - 27469155
Alignment:
| Q |
9 |
agcatagggataacgtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaaatgttcgatacaaagcttccacttgctaccaaataagatg |
108 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27468755 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27468854 |
T |
|
| Q |
109 |
tgatcaagtatagcctcatatttgttcatgatttaattagcgtcact----aattttgtaaacatgcttcagatatgttttcttcattatgataatgccg |
204 |
Q |
| |
|
|| |||||| |||||||||||| |||||||||||||| | || ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27468855 |
tgctcaagtgcagcctcatatttcttcatgatttaattggtgt-acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccg |
27468953 |
T |
|
| Q |
205 |
atgtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatcaattata |
304 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||| || ||| |
|
|
| T |
27468954 |
atgtgaagctggtaagtgactataaggccatggataacaatagatcaactcaaaccattctacatgtctgtgg-ttctactttcaagtctatctatcata |
27469052 |
T |
|
| Q |
305 |
tgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcatttctgagacaacaccatgtgatctttcatatgctc |
404 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27469053 |
tgatgcttctactcaagaattatgcattatctatctactacaccatttgaagtatatccattcattt-agagacaacaccatgtgatctttcatatgctc |
27469151 |
T |
|
| Q |
405 |
ttgt |
408 |
Q |
| |
|
|||| |
|
|
| T |
27469152 |
ttgt |
27469155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 27524243 - 27523845
Alignment:
| Q |
11 |
catagggataacgtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaaatgttcgatacaaagcttccacttgctaccaaataagatgtg |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
27524243 |
catagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaa-tatccaatacaaagcttccaattgctaccaaatgagatgtg |
27524145 |
T |
|
| Q |
111 |
atcaagtatagcctcatatttgttcatgatttaattag----cgtcactaattttgtaaacatgcttcagatatgttttcttcattatgataatgccgat |
206 |
Q |
| |
|
|||||| | | |||||||| |||||||||||||| | | ||| |||||| |||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
27524144 |
ctcaagtgcaacgtcatatttcttcatgatttaattggtttccttca-taatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgat |
27524046 |
T |
|
| Q |
207 |
gtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatg |
306 |
Q |
| |
|
|| |||||||| ||| || | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27524045 |
gtccagctggtaagtgtctacatggctatggataacaattgatcaacataaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatg |
27523946 |
T |
|
| Q |
307 |
acgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcatttctgagacaacaccatgtgatctttcatatgctctt |
406 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27523945 |
atgcttttgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcattt-agagacaacaccatgtgatctttcatatgctctt |
27523847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 27514606 - 27514215
Alignment:
| Q |
9 |
agcatagggataacgtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaaatgttcgatacaaagcttccacttgctaccaaataagatg |
108 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27514606 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27514507 |
T |
|
| Q |
109 |
tgatcaagtatagcctcatatttgttcatgatttaattagcgtcact----aattttgtaaacatgcttcagatatgttttcttcattatgataatgccg |
204 |
Q |
| |
|
| | ||||||||||| |||||||||||||| | || ||| |||||||||||||||||| ||| ||||||||| |||||||||||||| | |
|
|
| T |
27514506 |
tca---------gcctcatatttcttcatgatttaattggtgt-acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctg |
27514417 |
T |
|
| Q |
205 |
atgtgaagctggtatgtgactctaaggccatggataacaattgatcaacagaaaccattctacatgtctgtggtttgtactttcaagtctatcaattata |
304 |
Q |
| |
|
|||| |||| ||| |||||| ||| ||||| ||||||||| | ||||| ||||||||||| |||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
27514416 |
atgtccagctagtaagtgactataatgccatagataacaatataacaacataaaccattctatatgtttgtggctt-tactttcaagtctatcaattata |
27514318 |
T |
|
| Q |
305 |
tgacgcttctgcacaagaattatgcattatctatctactacaccatttgaagtatatccattcatttctgagacaacaccatgtgatctttcatatgctc |
404 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
27514317 |
tgatgcttatgctcaagaattatgcattatctatctactacaacacttgaagtttatccattcatct-agagacaacaccatgtgatctttcatatgctc |
27514219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 155 - 408
Target Start/End: Complemental strand, 27489684 - 27489433
Alignment:
| Q |
155 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
254 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||| |||||| ||||||| |||| | |||||| ||| |||| || ||||| || |
|
|
| T |
27489684 |
taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataaggcaatgtataattatggatcatca |
27489585 |
T |
|
| Q |
255 |
gaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgacgcttctgcacaagaattatgcattatctatctactacaccatttga |
354 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27489584 |
taggccattctacatgtctgtggtt-gtactttcaagtctatcaattatatgatgcttctgcacaagaattatgcattatctatctactacaccatttga |
27489486 |
T |
|
| Q |
355 |
agtatatccattcatttctgagacaacaccatgtgatctttcatatgctcttgt |
408 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27489485 |
agtatatccattcatttc-gagacaacaccatgtgatctttcatatgctcttgt |
27489433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 27503642 - 27503399
Alignment:
| Q |
11 |
catagggataacgtagcatgtggtgttgtcttagagtgtaccctacctt-cttaaacaaatgttcgatacaaagcttccacttgctaccaaataagatgt |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||| ||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
27503642 |
catagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaa-tgtccaatacaaagcttccacttgctaaaaaataagatgt |
27503544 |
T |
|
| Q |
110 |
gatcaagtatagcctcatatttgttcatgatttaattagcgtcactaattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
27503543 |
gatcaagtatagcctcatatttgttcatgatttaattagcgtcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtc |
27503444 |
T |
|
| Q |
210 |
aagctggtatgtgactctaaggccatggataacaattgatcaaca |
254 |
Q |
| |
|
||||| || |||||| |||||| |||||||||||| |||||||| |
|
|
| T |
27503443 |
cagctgataagtgactataaggcaatggataacaatagatcaaca |
27503399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 155 - 342
Target Start/End: Complemental strand, 27508481 - 27508295
Alignment:
| Q |
155 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
254 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||||| ||||| ||||| |||| ||| |||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
27508481 |
taattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataaggccatagataacaatagatcaaca |
27508382 |
T |
|
| Q |
255 |
gaaaccattctacatgtctgtggtttgtactttcaagtctatcaattatatgacgcttctgcacaagaattatgcattatctatctac |
342 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||| | |||||||||||||||||||| |||| |
|
|
| T |
27508381 |
gaaaccattctacatgtttgtgg-ttctacttacaagtctatcaattatatgatgcttcttctcaagaattatgcattatctagctac |
27508295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 27508587 - 27508488
Alignment:
| Q |
9 |
agcatagggataacgtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaaatgttcgatacaaagcttccacttgctaccaaataagatg |
108 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
27508587 |
agcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttcctaccaaatgagatg |
27508489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 27556965 - 27557081
Alignment:
| Q |
155 |
taattttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtgactctaaggccatggataacaattgatcaaca |
254 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| || ||| | |||||||| |||| | ||| || |||||||||||| |||||||| |
|
|
| T |
27556965 |
taattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtgattataacgcaatggataacaatagatcaaca |
27557064 |
T |
|
| Q |
255 |
gaaaccattctacatgt |
271 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27557065 |
taaaccattctacatgt |
27557081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 27497858 - 27497971
Alignment:
| Q |
159 |
tttgtaaacatgcttcagatatgttttcttcattatgataatgccgatgtgaagctggtatgtga-ctctaaggccatggataacaattgatcaacagaa |
257 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||| ||||| |||||||| |||| | |||||| ||||||||||| |||||||| || |
|
|
| T |
27497858 |
tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtgagatataaggcagtggataacaatagatcaacataa |
27497957 |
T |
|
| Q |
258 |
accattctacatgt |
271 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27497958 |
accattctacatgt |
27497971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 27506319 - 27506280
Alignment:
| Q |
155 |
taattttgtaaacatgcttcagatatgttttcttcattat |
194 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27506319 |
taattttgtaaacatgtttcagacatgttttcttcattat |
27506280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 27466484 - 27466517
Alignment:
| Q |
375 |
agacaacaccatgtgatctttcatatgctcttgt |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27466484 |
agacaacaccatgtgatgtttcatatgctcttgt |
27466517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 27473557 - 27473590
Alignment:
| Q |
375 |
agacaacaccatgtgatctttcatatgctcttgt |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27473557 |
agacaacaccatgtgatgtttcatatgctcttgt |
27473590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 27503272 - 27503239
Alignment:
| Q |
375 |
agacaacaccatgtgatctttcatatgctcttgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
27503272 |
agacaacaccatgtgatctttcatatgcccttgt |
27503239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 27526587 - 27526554
Alignment:
| Q |
375 |
agacaacaccatgtgatctttcatatgctcttgt |
408 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
27526587 |
agacaacaccatgtgatcattcatatgctcttgt |
27526554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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