View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13207_high_12 (Length: 301)
Name: NF13207_high_12
Description: NF13207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13207_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 40665845 - 40666041
Alignment:
| Q |
9 |
atttgttgtttatctggaatcaattaatgttgactgtgctaacggcaataagggtaaggtaatattgaattaaattgtttaaagctgaaaaggacagatt |
108 |
Q |
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| T |
40665845 |
atttgttgtttatctggaatcaattaacgttgactgtgctaacggcaataagggtaaggtaatattgaattaaattgtttaaagctgaaaaggacagatt |
40665944 |
T |
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| Q |
109 |
gaatagtttaacactgaacagtagaatagaatctagtatcttggaaagcatgtacgag--tgcagagactaaaacctgtcttcaagttcctcgtact |
203 |
Q |
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| T |
40665945 |
gaatagtttaacactgaacagtagaatagaatctagtatcttggaaagcatgtacgagaatgcagagactaaaacctgtcttcaagttcctcgtact |
40666041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 40666021 - 40666108
Alignment:
| Q |
207 |
tgtcttcaagttcctcgtactttttcccttgttagcatgcatgttcaaggcggcatatatatataccacaacatttgtaccaagaata |
294 |
Q |
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| T |
40666021 |
tgtcttcaagttcctcgtactttttcccttgttagcatgcatgttcaaggcggcatatatatataccacaacatttgtaccaagaata |
40666108 |
T |
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