View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13207_high_2 (Length: 377)

Name: NF13207_high_2
Description: NF13207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13207_high_2
NF13207_high_2
[»] chr1 (15 HSPs)
chr1 (1-297)||(28482177-28482472)
chr1 (298-342)||(28482109-28482153)
chr1 (157-283)||(4622081-4622205)
chr1 (169-245)||(7136994-7137068)
chr1 (139-210)||(44115934-44116005)
chr1 (157-204)||(44422687-44422734)
chr1 (170-223)||(4548722-4548773)
chr1 (162-234)||(27820344-27820414)
chr1 (157-281)||(31517700-31517822)
chr1 (162-245)||(2777885-2777966)
chr1 (144-204)||(25006069-25006129)
chr1 (168-204)||(27140477-27140513)
chr1 (162-245)||(34290229-34290310)
chr1 (155-226)||(37654684-37654753)
chr1 (157-252)||(52286666-52286759)
[»] chr6 (6 HSPs)
chr6 (144-204)||(33787780-33787840)
chr6 (157-204)||(1275137-1275184)
chr6 (164-262)||(8010352-8010448)
chr6 (162-204)||(31812048-31812090)
chr6 (212-281)||(3775088-3775157)
chr6 (144-197)||(22742341-22742394)
[»] chr4 (8 HSPs)
chr4 (168-281)||(27721716-27721827)
chr4 (157-232)||(36722678-36722751)
chr4 (168-204)||(56007678-56007714)
chr4 (161-204)||(18628578-18628621)
chr4 (157-200)||(30581716-30581759)
chr4 (157-203)||(17975405-17975451)
chr4 (161-281)||(2996565-2996683)
chr4 (170-199)||(20109581-20109610)
[»] chr2 (9 HSPs)
chr2 (157-233)||(18066116-18066190)
chr2 (157-199)||(16353849-16353891)
chr2 (210-281)||(17221500-17221571)
chr2 (157-203)||(3078676-3078722)
chr2 (157-226)||(18179255-18179322)
chr2 (157-229)||(34339894-34339964)
chr2 (162-234)||(40279190-40279260)
chr2 (151-219)||(41875675-41875741)
chr2 (157-201)||(37276734-37276778)
[»] chr3 (12 HSPs)
chr3 (157-252)||(2201116-2201209)
chr3 (157-245)||(33405162-33405249)
chr3 (157-244)||(52618991-52619076)
chr3 (210-281)||(27294385-27294456)
chr3 (162-204)||(2100190-2100232)
chr3 (157-281)||(14548681-14548803)
chr3 (157-204)||(2318632-2318680)
chr3 (168-204)||(20669171-20669207)
chr3 (178-297)||(22667413-22667529)
chr3 (178-297)||(22724052-22724168)
chr3 (219-283)||(25182945-25183009)
chr3 (164-204)||(40665424-40665464)
[»] chr5 (8 HSPs)
chr5 (157-251)||(2568646-2568738)
chr5 (157-199)||(17560454-17560496)
chr5 (157-234)||(39105452-39105527)
chr5 (157-204)||(12975335-12975382)
chr5 (157-207)||(21768229-21768279)
chr5 (156-193)||(10907366-10907403)
chr5 (144-204)||(18875336-18875396)
chr5 (210-262)||(41052907-41052959)
[»] chr8 (5 HSPs)
chr8 (169-234)||(27028831-27028894)
chr8 (160-204)||(37822693-37822737)
chr8 (169-245)||(37353245-37353319)
chr8 (208-244)||(37353188-37353224)
chr8 (157-232)||(38874634-38874707)
[»] chr7 (4 HSPs)
chr7 (157-199)||(14768111-14768153)
chr7 (162-251)||(12110353-12110440)
chr7 (156-200)||(20476549-20476593)
chr7 (157-280)||(25670547-25670668)
[»] scaffold0044 (1 HSPs)
scaffold0044 (157-197)||(51992-52032)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 28482472 - 28482177
Alignment:
1 atttcagatgatgccacaccctatatatacaaatggaaaagtcgaacaaaaattaatcttaaaattagagaggaagaaaatttacaatgatagctgctta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
28482472 atttcagatgatgccacaccctatatatacaaatggaaaagtagaacaaaaattaatcttaaaattagagaggaagaaaatttaccatgatagctgctta 28482373  T
101 gttaatgatc-tttatgtatacannnnnnngggtaaaccaagagaaagtccagttgctttcatataagatataagctgtttttataagttatcttggaga 199  Q
    |||||||||| ||||||||||||       |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
28482372 gttaatgatcttttatgtatacatttttttgggtaaaccaggagaaagtccagttgctttcatataagctataagctgtttttataagttatcttggaga 28482273  T
200 gcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcacaagttcgtatttcagtagat 297  Q
    ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||    
28482272 gcttac--gaaaataagctaaaaatagtttatgaatatatcataagatgtttctatgagctctatcgaacaatctcacaagttcgtatgtcagtagat 28482177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 28482153 - 28482109
Alignment:
298 cattcccataatcaattgaacttatcttcaataaaagtctatatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
28482153 cattcccataatcaattgaacttatcttcaataaaagtctatatt 28482109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 4622081 - 4622205
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatg 256  Q
    ||||||||||| ||||||||||||  ||| | |||||||||||||||  | |||||||||||||||| || ||||| | || ||||||| |||| | ||     
4622081 tttcatataagctataagctgtttccatatgctatcttggagagctt--gtgaaaataagctaaaaacagcttatggacatgtcataagatgttcccatt 4622178  T
257 agctctatcgaacagtctcacaagttc 283  Q
    || |||  | |||||||| ||||||||    
4622179 agatcttccaaacagtctaacaagttc 4622205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 7137068 - 7136994
Alignment:
169 tataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataag 245  Q
    ||||||||||||| ||||| ||||||||||| ||||   ||||||||||| ||||||  |||||||||| |||||||    
7137068 tataagctgttttcataagctatcttggagaactta--tgaaaataagctgaaaataacttatgaatatgtcataag 7136994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 44116005 - 44115934
Alignment:
139 aagagaaagtccagttgctttcatataagatataagctgtttttataagttatcttggagagcttacgagaa 210  Q
    |||| |||||| | ||| |||||||||| |||||| ||||||||||||| | ||||||||||| || |||||    
44116005 aagataaagtcaaattgttttcatataacatataaactgtttttataagctgtcttggagagcgtatgagaa 44115934  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 44422687 - 44422734
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||||||| |||||||| |||||||||| |||| |||||||||||    
44422687 tttcatataagctataagctatttttataagctatcctggagagctta 44422734  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 4548722 - 4548773
Alignment:
170 ataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaa 223  Q
    |||||||||||| ||||| |||||||||||||||   |||||||||||||||||    
4548722 ataagctgttttcataagctatcttggagagctt--cagaaaataagctaaaaa 4548773  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 27820414 - 27820344
Alignment:
162 tataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaa 234  Q
    |||||| |||| |||||||||||||| |||||||||||  |||   ||||||||||| ||||||| |||||||    
27820414 tataagctatatgctgtttttataagctatcttggagaattta--tgaaaataagctgaaaatagcttatgaa 27820344  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 31517822 - 31517700
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatg 256  Q
    ||||||||||| |||||||||| || ||||  | ||||||||||||||   ||||||||||| |||| || ||||||| || |||| || |||||  ||     
31517822 tttcatataagctataagctgtcttcataatctgtcttggagagctta--tgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgata 31517725  T
257 agctctatcgaacagtctcacaagt 281  Q
    || |||  | |||||||||||||||    
31517724 agttctcccaaacagtctcacaagt 31517700  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 2777885 - 2777966
Alignment:
162 tataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataag 245  Q
    |||||| ||||||||||||| |||||||| |||||||| ||||   ||||||||||| ||||  | |||||||||  |||||||    
2777885 tataagctataagctgttttaataagttaacttggagaactta--tgaaaataagctgaaaacggcttatgaatacgtcataag 2777966  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 25006129 - 25006069
Alignment:
144 aaagtccagttgctttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    |||||| | ||| ||||||||||| |||||| |||||| ||||| ||||||||||| ||||    
25006129 aaagtcaaattgttttcatataagctataagttgttttcataagctatcttggagatctta 25006069  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 27140477 - 27140513
Alignment:
168 atataagctgtttttataagttatcttggagagctta 204  Q
    |||||||||||||||||||| |||| |||||||||||    
27140477 atataagctgtttttataagctatcatggagagctta 27140513  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 34290229 - 34290310
Alignment:
162 tataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataag 245  Q
    |||||| ||||||||||||| ||||| ||||||| ||| ||||   ||||||||||| |||| |  |||||||||| |||||||    
34290229 tataagctataagctgttttcataagctatcttgaagaactta--tgaaaataagctgaaaacaacttatgaatatgtcataag 34290310  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 37654684 - 37654753
Alignment:
155 gctttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatag 226  Q
    ||||||||||||| || ||| |||||||| |||||||| ||||||| |||  | | ||||||||||||||||    
37654684 gctttcatataagctacaagttgtttttacaagttatcgtggagagttta--aaataataagctaaaaatag 37654753  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 52286666 - 52286759
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttc 252  Q
    ||||||||||| ||||| || |||| |||||| |||||| |||| ||| |   ||||||||||||||||| ||||| | |||||| ||| ||||||    
52286666 tttcatataagctataaactattttcataagtcatcttgaagagtttatgg--aaataagctaaaaatagcttatggacatatcagaagatgtttc 52286759  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 33787840 - 33787780
Alignment:
144 aaagtccagttgctttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    |||||| | ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
33787840 aaagtcaaattgatttcatataagttataagctgttttcataagttatcttggagagctta 33787780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 1275137 - 1275184
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||||||| ||||||||||||| ||| |||||| |||||||||||    
1275137 tttcatataagctataagctgttttcatatgttatcctggagagctta 1275184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 8010352 - 8010448
Alignment:
164 taagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctct 262  Q
    |||| ||||||||||||| |||||||||| |||||| ||||  || |||||| || ||||||| ||||||| || |||| || ||||||||| ||||||    
8010352 taagttataagctgttttaataagttatcctggagaactta-tag-aaataaactgaaaatagcttatgaacatgtcatgagttgtttctataagctct 8010448  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 31812090 - 31812048
Alignment:
162 tataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||    
31812090 tataagatataagttgttttcataagctatcttggagagctta 31812048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 3775157 - 3775088
Alignment:
212 ataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcacaagt 281  Q
    ||||||| |||| |||||||| | || ||||||| ||||||||| ||||||  |||| ||||||||||||    
3775157 ataagctgaaaacagtttatgcacatgtcataagctgtttctataagctcttccgaatagtctcacaagt 3775088  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 22742341 - 22742394
Alignment:
144 aaagtccagttgctttcatataagatataagctgtttttataagttatcttgga 197  Q
    |||||| | ||| ||||||||||| |||||||| ||||||||||||||| ||||    
22742341 aaagtcaaattgttttcatataagctataagctatttttataagttatcctgga 22742394  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 27721716 - 27721827
Alignment:
168 atataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcga 267  Q
    |||||||||||||| |||||||||| ||||||||||  | ||||||||||| |||| || ||||| |||| |||||||  |||| ||| |||||| |  |    
27721716 atataagctgttttcataagttatcctggagagctt--gcgaaaataagctgaaaacagcttatggatatgtcataagtagtttttataagctctcttaa 27721813  T
268 acagtctcacaagt 281  Q
    ||| ||||||||||    
27721814 acaatctcacaagt 27721827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 36722751 - 36722678
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatg 232  Q
    ||||||||||| |||||| |||||| |||||||||| || ||||||||   ||||||||||| ||||||| |||||    
36722751 tttcatataagttataagttgttttgataagttatcctgaagagctta--tgaaaataagcttaaaatagattatg 36722678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 56007678 - 56007714
Alignment:
168 atataagctgtttttataagttatcttggagagctta 204  Q
    ||||||| |||||||||||||||||||||||||||||    
56007678 atataagttgtttttataagttatcttggagagctta 56007714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 18628621 - 18628578
Alignment:
161 atataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||    
18628621 atataagttataaactgttttcataagttatcttggagagctta 18628578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 30581759 - 30581716
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagag 200  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||    
30581759 tttcgtataagctataagctgttttaataagttatcttggagag 30581716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 17975451 - 17975405
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagctt 203  Q
    ||||||||| |  |||||||||||||||||| |||||||||||||||    
17975451 tttcatatatgtaataagctgtttttataagctatcttggagagctt 17975405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 2996565 - 2996683
Alignment:
161 atataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagct 260  Q
    ||||||| |||||| |||||| ||||| ||||||||||||| ||   ||||||||| | |||| || ||||| | || ||||||| |||||  || ||||    
2996565 atataagttataagttgttttcataagctatcttggagagcgta--tgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagct 2996662  T
261 ctatcgaacagtctcacaagt 281  Q
    || || |||||||||| ||||    
2996663 ctctcaaacagtctcaaaagt 2996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 20109581 - 20109610
Alignment:
170 ataagctgtttttataagttatcttggaga 199  Q
    ||||||||||||||||||||||||||||||    
20109581 ataagctgtttttataagttatcttggaga 20109610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 18066116 - 18066190
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatga 233  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||| ||||  |||||||||| | ||||||| ||||||    
18066116 tttcatataagctataagctgttttcataagctatcttggagaactta--agaaaataaggtgaaaatagcttatga 18066190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 16353849 - 16353891
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggaga 199  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
16353849 tttcatataagctataagctgtttttataagctatcttggaga 16353891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 17221571 - 17221500
Alignment:
210 aaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcacaagt 281  Q
    |||||||||||||| |||||||| |||| ||||||| | |||| || ||||||  |||||||||||| ||||    
17221571 aaataagctaaaaaaagtttatggatatgtcataagatatttccataagctcttccgaacagtctcagaagt 17221500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 3078722 - 3078676
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagctt 203  Q
    ||||||||| |  |||||||||||||||||| |||||||||||||||    
3078722 tttcatatatgtaataagctgtttttataagctatcttggagagctt 3078676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 18179322 - 18179255
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatag 226  Q
    ||||||||||| ||||||||| ||| ||||| |||| |||||| |||||  ||||||||||| |||||||    
18179322 tttcatataagctataagctgctttcataagctatcctggagaacttac--gaaaataagctgaaaatag 18179255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 34339894 - 34339964
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagttt 229  Q
    |||| |||||| ||||| || |||| ||||||  ||||||||||||||  |||||||||||| ||||||||||    
34339894 tttcgtataaggtataaactattttcataagtattcttggagagctta--agaaaataagctgaaaatagttt 34339964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 40279190 - 40279260
Alignment:
162 tataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaa 234  Q
    ||||||||||||| |||||| ||||| ||| ||||||| ||||   |||||| |||| |||||||||||||||    
40279190 tataagatataagttgttttcataagctatgttggagaactta--tgaaaattagctgaaaatagtttatgaa 40279260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 41875741 - 41875675
Alignment:
151 agttgctttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagcta 219  Q
    ||||| |||| |||||| | ||||||||||| ||||| |||||||| |||||||  |||||||||||||    
41875741 agttgttttcgtataagctgtaagctgttttcataagctatcttggtgagctta--agaaaataagcta 41875675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 37276734 - 37276778
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagc 201  Q
    ||||||||||| |||||| |||||| |||||||||| ||||||||    
37276734 tttcatataagttataagttgttttcataagttatcctggagagc 37276778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 2201116 - 2201209
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttc 252  Q
    ||||||||||| ||||||||||||| || || ||||||||| || |||  || ||| ||||| |||| |||||||||| |||||||||| ||||||    
2201116 tttcatataagctataagctgttttcattagctatcttggatagttta--aggaaaaaagctgaaaagagtttatgaacatatcataagttgtttc 2201209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 33405249 - 33405162
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataag 245  Q
    ||||||||||| ||||||||||||| ||||| ||||||| ||| |||| || ||  |||||  |||| |||||||||| ||||||||||    
33405249 tttcatataagctataagctgttttcataagctatcttgaagaacttatga-aagttaagccgaaaacagtttatgaacatatcataag 33405162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 52618991 - 52619076
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataa 244  Q
    ||||||||||| ||||||||||||| | ||| ||||||| |||||||  | ||||||||| | ||||||| ||||||| || ||||||    
52618991 tttcatataagttataagctgttttcacaagctatcttgaagagctt--gtgaaaataaggtgaaaatagcttatgaacatgtcataa 52619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 27294385 - 27294456
Alignment:
210 aaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcacaagt 281  Q
    ||||||| | |||| || ||||||  ||||||| || |||||||||||||||| || |||||||||||||||    
27294385 aaataagatgaaaacagcttatgagcatatcatgagttgtttctatgagctctctcaaacagtctcacaagt 27294456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 2100232 - 2100190
Alignment:
162 tataagatataagctgtttttataagttatcttggagagctta 204  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
2100232 tataagctataagttgttttcataagttatcttggagagctta 2100190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 14548803 - 14548681
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatg 256  Q
    ||||||||||| |||||| |||||| |||||||||  |||||||||||   | ||||||||| |||| ||  ||| || || ||||| | |||||  ||     
14548803 tttcatataagctataagttgttttcataagttattctggagagctta--tggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcata 14548706  T
257 agctctatcgaacagtctcacaagt 281  Q
    |||||| || |||||||||||||||    
14548705 agctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 2318632 - 2318680
Alignment:
157 tttcatataagatataagctgtttttataagtta-tcttggagagctta 204  Q
    ||||||||||  |||||| ||||||||||||||| ||||||||||||||    
2318632 tttcatataaactataagttgtttttataagttattcttggagagctta 2318680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 20669171 - 20669207
Alignment:
168 atataagctgtttttataagttatcttggagagctta 204  Q
    |||||||||||||| ||||| ||||||||||||||||    
20669171 atataagctgttttcataagctatcttggagagctta 20669207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 22667413 - 22667529
Alignment:
178 tttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcac 277  Q
    |||| ||||| |||||||||||||||||  | ||||||||||||||||  || |||| || | ||| | |||||| || | |||| || |||||||||||    
22667413 ttttcataagctatcttggagagcttac--ggaaataagctaaaaataacttctgaa-atgttatatgctgtttccataaactctctcaaacagtctcac 22667509  T
278 aagttcgtatttcagtagat 297  Q
    |||| | ||| |||||||||    
22667510 aagtgcttatgtcagtagat 22667529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 22724052 - 22724168
Alignment:
178 tttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcac 277  Q
    |||| ||||| |||||||||||||||||  | ||||||||||||||||  || |||| || | ||| | |||||| || | |||| || |||||||||||    
22724052 ttttcataagctatcttggagagcttac--ggaaataagctaaaaataacttctgaa-atgttatatgctgtttccataaactctctcaaacagtctcac 22724148  T
278 aagttcgtatttcagtagat 297  Q
    |||| | ||| |||||||||    
22724149 aagtgcttatgtcagtagat 22724168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 25183009 - 25182945
Alignment:
219 aaaaatagtttatgaatatatcataaggtgtttctatgagctctatcgaacagtctcacaagttc 283  Q
    |||||||| ||||| |||| ||||||| |||||  || |||||| || |||||||||||||||||    
25183009 aaaaatagcttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaagttc 25182945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 40665424 - 40665464
Alignment:
164 taagatataagctgtttttataagttatcttggagagctta 204  Q
    |||| |||||| |||||| ||||||||||||||||||||||    
40665424 taagttataagatgttttcataagttatcttggagagctta 40665464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 2568646 - 2568738
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgttt 251  Q
    |||| |||||| |||||| |||||| ||||| |||| ||||||||| | ||  ||||||||||||||||  |||||||||| ||||||| |||||    
2568646 tttcgtataagctataagttgttttcataagctatcatggagagctaatga--aaataagctaaaaataacttatgaatatgtcataagctgttt 2568738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 17560496 - 17560454
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggaga 199  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
17560496 tttcatataaggtataagctgtttttataagttatcttcgaga 17560454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 39105452 - 39105527
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaa 234  Q
    |||| |||||| ||||| ||||||| ||||| ||||||||||| ||||   ||||||||||||||||||| |||||||    
39105452 tttcgtataagctataatctgttttcataagctatcttggagaactta--tgaaaataagctaaaaatagcttatgaa 39105527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 12975335 - 12975382
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||||||| |||||||||| || ||||| ||||||||||||||||    
12975335 tttcatataagctataagctgtgttcataagctatcttggagagctta 12975382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 21768279 - 21768229
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacga 207  Q
    ||||||||||  | ||||||||||| ||||||||||||| |||||||||||    
21768279 tttcatataaactttaagctgttttcataagttatcttgaagagcttacga 21768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 10907366 - 10907403
Alignment:
156 ctttcatataagatataagctgtttttataagttatct 193  Q
    |||||||||||  |||||||||||||||||||||||||    
10907366 ctttcatataatctataagctgtttttataagttatct 10907403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 18875336 - 18875396
Alignment:
144 aaagtccagttgctttcatataagatataagctgtttttataagttatcttggagagctta 204  Q
    |||||| | ||| ||||||| ||| ||||||||||||| ||||| |||| |||||||||||    
18875336 aaagtcaaattgatttcatacaagttataagctgttttaataagatatcctggagagctta 18875396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 41052907 - 41052959
Alignment:
210 aaataagctaaaaatagtttatgaatatatcataaggtgtttctatgagctct 262  Q
    ||||||| ||||||||||||||||| || ||||| | ||||||||| ||||||    
41052907 aaataagttaaaaatagtttatgaacatgtcataggttgtttctataagctct 41052959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 27028831 - 27028894
Alignment:
169 tataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaa 234  Q
    ||||||||||||| ||||| ||||||||||||||||   ||||||||||| ||||||| |||||||    
27028831 tataagctgttttcataagctatcttggagagctta--tgaaaataagctgaaaatagcttatgaa 27028894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 37822737 - 37822693
Alignment:
160 catataagatataagctgtttttataagttatcttggagagctta 204  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||    
37822737 catataagatataagctgtttatagaagttatcttgaagagctta 37822693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 37353319 - 37353245
Alignment:
169 tataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataag 245  Q
    |||||||||||||  |||| |||||| ||||||||| ||  |||||| || |||| ||||||||||||| |||||||    
37353319 tataagctgttttcttaagctatctttgagagcttatga--aaataatctgaaaacagtttatgaatatgtcataag 37353245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 37353224 - 37353188
Alignment:
208 gaaaataagctaaaaatagtttatgaatatatcataa 244  Q
    ||||||||||| |||||||||||||||||| ||||||    
37353224 gaaaataagctgaaaatagtttatgaatatgtcataa 37353188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 38874634 - 38874707
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatg 232  Q
    ||||||||||| | ||||||||||| ||||| ||| ||||||| | ||   ||||||||||||||||||| |||||    
38874634 tttcatataagctctaagctgttttcataagctattttggagaacata--tgaaaataagctaaaaatagcttatg 38874707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 14768111 - 14768153
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggaga 199  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
14768111 tttcatataaggtataagctgtttttataagttatcttcgaga 14768153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 12110353 - 12110440
Alignment:
162 tataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgttt 251  Q
    |||||| ||||||||||||| ||||| ||||||| ||| ||||   |||||||| ||||||| ||||| |||| || ||||||| |||||    
12110353 tataagctataagctgttttcataagctatcttgaagaactta--tgaaaataatctaaaaacagtttgtgaacatgtcataagttgttt 12110440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 20476593 - 20476549
Alignment:
156 ctttcatataagatataagctgtttttataagttatcttggagag 200  Q
    ||||||| |||||||||||||||||  ||||| ||||||||||||    
20476593 ctttcatctaagatataagctgtttcgataagctatcttggagag 20476549  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 25670668 - 25670547
Alignment:
157 tttcatataagatataagctgtttttataagttatcttggagagcttacgagaaaataagctaaaaatagtttatgaatatatcataaggtgtttctatg 256  Q
    ||||||||||| ||| |  |||||||||||  |||||||||||||||  | ||||||||||| |||| | ||||| || || ||||||| |||||  ||     
25670668 tttcatataagctatcaattgtttttataacatatcttggagagctt--gtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcata 25670571  T
257 agctctatcgaacagtctcacaag 280  Q
    || | | || ||||||||||||||    
25670570 agttttctcaaacagtctcacaag 25670547  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 52032 - 51992
Alignment:
157 tttcatataagatataagctgtttttataagttatcttgga 197  Q
    ||||||||||| ||||||||||||| || ||||||||||||    
52032 tttcatataagctataagctgttttcattagttatcttgga 51992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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