View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13207_high_3 (Length: 361)

Name: NF13207_high_3
Description: NF13207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13207_high_3
NF13207_high_3
[»] chr7 (4 HSPs)
chr7 (139-360)||(36358786-36359009)
chr7 (142-274)||(36347607-36347738)
chr7 (11-66)||(36359082-36359137)
chr7 (11-54)||(36347844-36347887)
[»] chr5 (2 HSPs)
chr5 (308-361)||(29848241-29848294)
chr5 (309-346)||(33091440-33091477)
[»] chr6 (1 HSPs)
chr6 (308-346)||(14028459-14028497)
[»] chr2 (1 HSPs)
chr2 (308-346)||(14462566-14462604)
[»] chr1 (4 HSPs)
chr1 (196-258)||(21183885-21183947)
chr1 (308-346)||(40050991-40051029)
chr1 (312-346)||(35637008-35637042)
chr1 (308-345)||(7128000-7128037)
[»] chr3 (2 HSPs)
chr3 (309-346)||(41267358-41267395)
chr3 (309-345)||(48305056-48305092)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 139 - 360
Target Start/End: Complemental strand, 36359009 - 36358786
Alignment:
Q  139 ctcagtattggaagtttgggggctggaaaatccaaggactttgtttcgggagtgttagtgaatggagctaagatttctggaactacaaatggagttagaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359009 ctcagtattggaagtttgggggctggaaaatccaaggactttgtttctggagtgttagtgaatggagctaagatttctggaactacaaatggagttagaa 36358910  T
Q  239 ttaagacatggccggtaattttaaacttttaatttagtccactccttctaa--tcnnnnnnnnnnnnnnnngaaattcaaacatcttcattagataatag 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |                 |||||||||||||||||||||||||||||    
T  36358909 ttaagacatggccggtaattttaaacttttaatttagtccactccttctaatttatttatttattttttttgaaattcaaacatcttcattagataatag 36358810  T
Q  337 aagagttacaatcagtactagttg 360  Q
    |||||||||||||| |||||||||    
T  36358809 aagagttacaatcaatactagttg 36358786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 36347738 - 36347607
Alignment:
Q  142 agtattggaagtttgggggctggaaaatccaaggactttgtttcgggagtgttagtgaatggagctaagatttctggaactacaaatggagttagaatta 241  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  36347738 agtattggaagcttgggggctggaaaatccaaggacattgtttcgggagtaatggtgaatggagctaagatttctggaactacaaatggagttagaatta 36347639  T
Q  242 agacatggccggtaattttaaacttttaattta 274  Q
    |||| ||||||||||||| ||| ||||||||||    
T  36347638 agacttggccggtaatttcaaa-ttttaattta 36347607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 36359137 - 36359082
Alignment:
Q  11 cacagacattacttgcggaccaggccatggcatcaggtagttaattacttgagtga 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36359137 cacagacattacttgcggaccaggccatggcatcaggtagttaattacttgagtga 36359082  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 36347887 - 36347844
Alignment:
Q  11 cacagacattacttgcggaccaggccatggcatcaggtagttaa 54  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  36347887 cacaaacataacttgcggaccaggccatggcatcaggtagttaa 36347844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 29848294 - 29848241
Alignment:
Q  308 gaaattcaaacatcttcattagataatagaagagttacaatcagtactagttgc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29848294 gaaattcaaacatcttcattagataatagaagagttacaatcagtactagttgc 29848241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 33091440 - 33091477
Alignment:
Q  309 aaattcaaacatcttcattagataatagaagagttaca 346  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33091440 aaattcaaacatcttcattagataatagaagtgttaca 33091477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 14028459 - 14028497
Alignment:
Q  308 gaaattcaaacatcttcattagataatagaagagttaca 346  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14028459 gaaattcaaacatcttcattagataatagaagtgttaca 14028497  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 14462566 - 14462604
Alignment:
Q  308 gaaattcaaacatcttcattagataatagaagagttaca 346  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14462566 gaaattcaaacatcttcattagataatagaagtgttaca 14462604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 21183947 - 21183885
Alignment:
Q  196 gtgaatggagctaagatttctggaactacaaatggagttagaattaagacatggccggtaatt 258  Q
    ||||||||||||||  | ||| ||||||| |||||||| |||||||||||||||| |||||||    
T  21183947 gtgaatggagctaaattatctagaactactaatggagtaagaattaagacatggcaggtaatt 21183885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 40051029 - 40050991
Alignment:
Q  308 gaaattcaaacatcttcattagataatagaagagttaca 346  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  40051029 gaaattcaaacatcttcattagataatagaagtgttaca 40050991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 35637008 - 35637042
Alignment:
Q  312 ttcaaacatcttcattagataatagaagagttaca 346  Q
    |||||||||||||||||||||||||||| ||||||    
T  35637008 ttcaaacatcttcattagataatagaagtgttaca 35637042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 7128037 - 7128000
Alignment:
Q  308 gaaattcaaacatcttcattagataatagaagagttac 345  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  7128037 gaaattcaaacatcttaattagataatagaagtgttac 7128000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 41267358 - 41267395
Alignment:
Q  309 aaattcaaacatcttcattagataatagaagagttaca 346  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41267358 aaattcaaacatcttcattagataatagaagtgttaca 41267395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 48305056 - 48305092
Alignment:
Q  309 aaattcaaacatcttcattagataatagaagagttac 345  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48305056 aaattcaaacatcttcattagataatagaagtgttac 48305092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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