View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13207_high_6 (Length: 348)
Name: NF13207_high_6
Description: NF13207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13207_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 32885166 - 32884826
Alignment:
| Q |
1 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885166 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatga |
32885067 |
T |
|
| Q |
101 |
ttggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggaggaaaagtgcatgacatgtt-ggtggaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
32885066 |
ttggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttcggtggaag |
32884967 |
T |
|
| Q |
200 |
aataatgtatattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaggaggagattc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32884966 |
aataatgtatattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaggaggagattc |
32884867 |
T |
|
| Q |
300 |
tatatcaaaaagacatatgaatgcctttatacatattcttc |
340 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32884866 |
tatataaaaaagacatatgaatgcctttatacatattcttc |
32884826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 32899209 - 32898869
Alignment:
| Q |
1 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32899209 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatga |
32899110 |
T |
|
| Q |
101 |
ttggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggaggaaaagtgcatgacatgttggtggaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32899109 |
ttggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaaga |
32899010 |
T |
|
| Q |
201 |
ataatgtatattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattc |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32899009 |
ataatgtatattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattc |
32898910 |
T |
|
| Q |
300 |
tatatcaaaaagacatatgaatgcctttatacatattcttc |
340 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
32898909 |
taaatcaaaaagacatatgaatgactttatacacattcttc |
32898869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 32880339 - 32879997
Alignment:
| Q |
1 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32880339 |
aatgcttgttcaaacagtttgttctgccttgcagtccaagaggttgccatttgttgatgaatgaatgaatatgaataatattgttagaaaaagaatatgg |
32880240 |
T |
|
| Q |
101 |
tt--ggttatatattttttagtcaagtgaaggtatgggaaagaggttactaattgagttccttatatgcaggaggaaaagtgcatgacatgttggtggaa |
198 |
Q |
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|| |||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32880239 |
ttttggttatttgttttttagtcaagtgaaagtatgggaaagaggtgactaattgagttccttatatgcaggagaaaaagtgcatgacatgttggtggaa |
32880140 |
T |
|
| Q |
199 |
gaataatgtatattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagat |
297 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32880139 |
gaataatgtttattttccaaaatgacactgaagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagat |
32880040 |
T |
|
| Q |
298 |
tctatatcaaaaagacatatgaatgcctttatacatattcttc |
340 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
32880039 |
tctaaatcaaaaagacatatgaatgactttatacatattcttc |
32879997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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