View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13207_high_9 (Length: 325)
Name: NF13207_high_9
Description: NF13207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13207_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 181270 - 180976
Alignment:
| Q |
1 |
gtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacat |
100 |
Q |
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| T |
181270 |
gtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacat |
181171 |
T |
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| Q |
101 |
ataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaaga |
200 |
Q |
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| T |
181170 |
ataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgcaattcaaga |
181071 |
T |
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| Q |
201 |
tatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatatt |
295 |
Q |
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| T |
181070 |
tatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatt |
180976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1701697 - 1701402
Alignment:
| Q |
1 |
gtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacat |
100 |
Q |
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| T |
1701697 |
gtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgatattgagactt |
1701598 |
T |
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| Q |
101 |
ataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaaga |
200 |
Q |
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| T |
1701597 |
aggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtgaaattcaaga |
1701498 |
T |
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| Q |
201 |
tatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattg |
296 |
Q |
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| T |
1701497 |
tatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtagtattg |
1701402 |
T |
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