View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13208_high_1 (Length: 900)
Name: NF13208_high_1
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 4e-99; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 26 - 245
Target Start/End: Complemental strand, 37645441 - 37645224
Alignment:
| Q |
26 |
ccaattacacaaacatgcatggatccttgctaattcatgagtacataaatctaagtatgagaggaaatttgtacacaaaagtaaccaaaagaaaacatta |
125 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37645441 |
ccaattacacaaacatgcatggatccgtgataatttat-agtacataaatctaagtatgagaggaaatttgt-cacaaaagtaaccaaaaaaaaacatta |
37645344 |
T |
|
| Q |
126 |
atacctcaacctgcaatttttacgatgacaattgcaaattttctcatactcttacacaattgcaattatcacgataacaaaattgcaatcctttctatta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37645343 |
atacctcaacctgcaatttttacgatgacaattgcaaattttctcatactctcacacaattgcaattatcacgataacaaaattgcaatcctttctatta |
37645244 |
T |
|
| Q |
226 |
aaatcattgcagagaaaaat |
245 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37645243 |
aaatcattgcagagaaaaat |
37645224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 360 - 597
Target Start/End: Complemental strand, 37644144 - 37643887
Alignment:
| Q |
360 |
caacttatcatctcttcatttaaagtctcgtatttcttcattttatatcaatttcaacttcacaaagtaaaatataatttttacacatttacaaaaggag |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37644144 |
caacttatcatctcttcatttaaagtctcgtatttcttcattttatatcaatttcaacttcacaaagtacaatataatttttacacatttataaaaggag |
37644045 |
T |
|
| Q |
460 |
tacccttcaacttttttgtcatctcattt----------aatcc----------ttatttatttaacgtgctagtggccaaactcttcacagtaatgaca |
539 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
37644044 |
tacacttcaacttttttgtcatctcatttatccttattaaatccttcatggattttatttatttaacttgttagtggccaaactcttcacagtaatgaca |
37643945 |
T |
|
| Q |
540 |
cttgacaatactcatatttgtttattgaaattttctaccatgttaatccccacaatac |
597 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643944 |
cttgacaatactcatgtttgtttattgaaattttctaccatgttaatccccacaatac |
37643887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 37644402 - 37644342
Alignment:
| Q |
237 |
gagaaaaattgtatatcctctaaagacacacaattacccaagtctcaatacatccagaaga |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37644402 |
gagaaaaattgtatatcctctaaagacacacaattacctaagtctcaatacatccagaaga |
37644342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 648 - 709
Target Start/End: Complemental strand, 37643860 - 37643799
Alignment:
| Q |
648 |
tcatatgaagattcatctacatgcctacatccattatttgcttactctccttcaatgctctc |
709 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37643860 |
tcatatgaagattcatctacatgactacatccattatttgtttactctccttcaatgctctc |
37643799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 37644212 - 37644172
Alignment:
| Q |
292 |
agaagactggtgttgttgtagtgaagaaaattaaaaacaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37644212 |
agaagactggtgttgttgtagtgaagaaaattaaaaacaac |
37644172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 860
Target Start/End: Complemental strand, 37642862 - 37642793
Alignment:
| Q |
790 |
caagtttctttcaacacggtcactttaatttattgaccaagcgtcattcgaattgtgcttactgccttttt |
860 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
37642862 |
caagtttctttcaacactgtcactt-aatttatgaagcaagcgtcattcgaattgtgcttgctgctttttt |
37642793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 742 - 788
Target Start/End: Complemental strand, 37642945 - 37642899
Alignment:
| Q |
742 |
agtcatttaaaagatttgggcagtgatgccaacaaaagtaacacttg |
788 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
37642945 |
agtcatttaaaagttttgggcagtgaagccaataaaagtaacacttg |
37642899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 24528977 - 24528920
Alignment:
| Q |
374 |
ttcatttaaagtctcgtatttcttcatttta-tatcaatttcaacttcacaaagtaaa |
430 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||| |||| ||||| |||||||| |
|
|
| T |
24528977 |
ttcattcaaagtctcatatttcttcattttattatcaacttcatcttcataaagtaaa |
24528920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University