View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_10 (Length: 557)
Name: NF13208_high_10
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 46458245 - 46457704
Alignment:
| Q |
1 |
tggctagttcagataaagttgactgttgtcacttctcctcggatggaaaactatttgttactggtggtcgtgataaaaaggtatattctgggtcgatcca |
100 |
Q |
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| T |
46458245 |
tggctagttcagataaagttgactgttgtcacttctcctcggatggaaaactatttgttactggtggtcgtgataaaaaggtatattctgggtcgatcca |
46458146 |
T |
|
| Q |
101 |
acttttaattatgaaatgatctctattcagcaatgttgttatatttagtgtttgtttaaagaaatttttgtttatcaatttgaatttgttaacctgctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46458145 |
acttttaattatgaaatgatctctattcagcaatgttgttatatttagtgtttgtttaaagaaatttttgtttatcaatttgaatttgttaacctgctat |
46458046 |
T |
|
| Q |
201 |
gagatgcaggcttctctatggtgcacaaaattgtttaacctgaaatctacgcttgaagagcacactcgacggataactgatgttagatttagcccatgca |
300 |
Q |
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| T |
46458045 |
gagatgcaggcttctctatggtgcacaaaattgtttaacctgaaatctacgcttgaagagcacactcaacggataactgatgttagatttagcccaagca |
46457946 |
T |
|
| Q |
301 |
tgttctatgttgctacgtcctcagccgataaaactgtaaaggtttgggatgttaataatgtaagtttagattttcatgattcaacttcaattttatagta |
400 |
Q |
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| T |
46457945 |
tgttctatgttgctacgtcctcagccgataaaactgtaaaggtttgggatgttaataatgtaagtttagattttcatgattcaacttcaattttatagta |
46457846 |
T |
|
| Q |
401 |
attatcgaccaatttggatttaaatagagattgggaaaataatcaggattttacttttatgatataaatctttgccgtgaaaactataacccatttctaa |
500 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46457845 |
attatcgaccaatttggatttaaatagagattgagaaaataatcaggattttacttttatgatataaatctttgccgtgaaaactataacccatttctaa |
46457746 |
T |
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| Q |
501 |
tctcactccttaaacatcttattgtattaatcatcacattta |
542 |
Q |
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| T |
46457745 |
tctcactccttaaacatcttattgtattaatcatcacattta |
46457704 |
T |
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