View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13208_high_12 (Length: 462)

Name: NF13208_high_12
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13208_high_12
NF13208_high_12
[»] chr2 (3 HSPs)
chr2 (47-212)||(33370088-33370255)
chr2 (55-210)||(33363748-33363903)
chr2 (60-214)||(5839239-5839393)
[»] chr1 (8 HSPs)
chr1 (236-443)||(41448618-41448835)
chr1 (47-215)||(41431799-41431967)
chr1 (55-214)||(41426407-41426566)
chr1 (64-215)||(41442406-41442557)
chr1 (107-215)||(41453664-41453772)
chr1 (16-147)||(41448905-41449037)
chr1 (109-183)||(52472991-52473066)
chr1 (108-141)||(7238212-7238245)
[»] scaffold0648 (1 HSPs)
scaffold0648 (55-215)||(5894-6054)
[»] scaffold0274 (1 HSPs)
scaffold0274 (55-215)||(17404-17564)
[»] chr7 (1 HSPs)
chr7 (55-215)||(7762943-7763103)
[»] chr8 (1 HSPs)
chr8 (62-208)||(21223819-21223965)
[»] chr4 (1 HSPs)
chr4 (61-182)||(1004661-1004782)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 33370255 - 33370088
Alignment:
Q  47 aagtatcgtcaagcacataccggggg--tacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgc 144  Q
    ||||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33370255 aagtatcctcaaccacataccgggggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgc 33370156  T
Q  145 tccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33370155 tccaataatcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatg 33370088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 33363903 - 33363748
Alignment:
Q  55 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 154  Q
    |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33363903 tcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatc 33363804  T
Q  155 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctga 210  Q
    || || |||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33363803 acagctctcatgagatccatccttgattcgaagattctcacaaatattgtatctga 33363748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 5839239 - 5839393
Alignment:
Q  60 cacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgc 159  Q
    |||||||||| |||||||||||| | |||   || ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  5839239 cacataccggcggtacattgggaaagccaccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacagc 5839338  T
Q  160 cctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 214  Q
    ||||||||||||||| |||||||| || ||||  |||||||||| ||||||||||    
T  5839339 cctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatgag 5839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 236 - 443
Target Start/End: Complemental strand, 41448835 - 41448618
Alignment:
Q  236 tcaaagaaatggccagctggttgagcagtatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaataaatatctggac 335  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41448835 tcaaagaaatggccggctggttgagcaatatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaacaaatatctggac 41448736  T
Q  336 ataattgaaccaaagataaatttggcatctttcagtaagaa-gttataaagaaaataagccaa---------ttcgataaaacgtgaactagccctacca 425  Q
    ||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||||||||||||||         || ||||||||||||||||| |||||||    
T  41448735 ataatagaaccaaagataattttgggatcgttcagtaagaatattataaagaaaataagccaatgtactccgttggataaaacgtgaactagacctacca 41448636  T
Q  426 attcagtagcaatgaaca 443  Q
     |||||||||||||||||    
T  41448635 tttcagtagcaatgaaca 41448618  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 41431967 - 41431799
Alignment:
Q  47 aagtatcgtcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctc 146  Q
    ||||||| |||| ||| ||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41431967 aagtatcatcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctc 41431868  T
Q  147 caataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 215  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41431867 caataatcacagccctcatgagatccatccttgattcgaagactctcacaaatattgtatctgatgagc 41431799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 41426566 - 41426407
Alignment:
Q  55 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 154  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  41426566 tcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataatc 41426467  T
Q  155 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 214  Q
    || ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41426466 acagccctcatgagatccatccttgattcacagactctcacaaatattgtatctgatgag 41426407  T

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Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 41442557 - 41442406
Alignment:
Q  64 taccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctc 163  Q
    ||||||||||||||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  41442557 taccgggggtacattgggatagccagttggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagctctc 41442458  T
Q  164 atgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 215  Q
    | ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  41442457 aagagatccatccttgattcgcagactctcacaaatattgtatttgatgagc 41442406  T

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Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 41453772 - 41453664
Alignment:
Q  107 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattcgtagactctcacaaatattgtat 206  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  207 ctgatgagc 215  Q
    |||||||||    
T  41453672 ctgatgagc 41453664  T

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Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 41449037 - 41448905
Alignment:
Q  16 atatattagtttgttgttccnnnnnnntatgaagtatcgtcaagcacataccgggggtacattgggatatccaggggg-aaagtaaacatcaaaaaagaa 114  Q
    ||||||||||||||||||||       ||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41449037 atatattagtttgttgttccaaaaaaatatgaagtatcctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaa 41448938  T
Q  115 aagaccgtcatggtaaggagtcccttctgctcc 147  Q
    |||||||| ||||||||||||| ||||||||||    
T  41448937 aagaccgttatggtaaggagtctcttctgctcc 41448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 52473066 - 52472991
Alignment:
Q  109 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcactgccctcatgagatccatccttgattc 183  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| || ||||||| ||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattc 52472991  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 7238212 - 7238245
Alignment:
Q  108 aaaagaaaagaccgtcatggtaaggagtcccttc 141  Q
    |||||||||||||||||||||||| |||||||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttc 7238245  T

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Target: scaffold0648 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 6054 - 5894
Alignment:
Q  55 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 154  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6054 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 5955  T
Q  155 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 215  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  5954 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 5894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 17404 - 17564
Alignment:
Q  55 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 154  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17404 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 17503  T
Q  155 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 215  Q
    || ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  17504 acagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagc 17564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 55 - 215
Target Start/End: Original strand, 7762943 - 7763103
Alignment:
Q  55 tcaagcacataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 154  Q
    |||| ||| |||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7762943 tcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttgtgctccaataatc 7763042  T
Q  155 actgccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 215  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7763043 acagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagc 7763103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 21223819 - 21223965
Alignment:
Q  62 cataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgccc 161  Q
    |||||||| |||||||||||| | |||  ||||||| ||| |||||||||||| || || ||||| ||||| || || ||||||||||||||||| ||||    
T  21223819 cataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataatcacagccc 21223918  T
Q  162 tcatgagatccatccttgattcgtagactctcacaaatattgtatct 208  Q
    |||  ||||| || |||||||| || ||||| |||||||||| ||||    
T  21223919 tcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 1004782 - 1004661
Alignment:
Q  61 acataccgggggtacattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcactgcc 160  Q
    |||||||||||||||| |||||||   |   || ||||||| ||||||||||||||||||||  |||||||||||||||| || ||||||||| || |||    
T  1004782 acataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataattacagcc 1004683  T
Q  161 ctcatgagatccatccttgatt 182  Q
    ||||  |||| |||| ||||||    
T  1004682 ctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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