View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13208_high_14 (Length: 437)

Name: NF13208_high_14
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13208_high_14
NF13208_high_14
[»] chr7 (12 HSPs)
chr7 (202-437)||(4292793-4293028)
chr7 (7-157)||(4292598-4292748)
chr7 (204-343)||(4535612-4535751)
chr7 (202-343)||(4525863-4526004)
chr7 (202-343)||(4527597-4527738)
chr7 (53-152)||(4535794-4535894)
chr7 (80-157)||(4537135-4537211)
chr7 (202-343)||(19411657-19411798)
chr7 (53-157)||(4526041-4526143)
chr7 (53-157)||(4527450-4527555)
chr7 (59-150)||(19411514-19411606)
chr7 (381-433)||(4527767-4527820)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 202 - 437
Target Start/End: Original strand, 4292793 - 4293028
Alignment:
Q  202 accaattcactagctctattaagctatattaaggagaaactttagtaggagtctttctttcattttccctcaaattataatatgtgatggtataacttat 301  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4292793 accaattcactagctctattaagctatattaaggagaaattttagtaagagtctttcttttattttccctcaaattataatatgtgatggtataacttat 4292892  T
Q  302 agaggcggaggaaataaaaagaggaataaagactaaaaacatgaaaaacatttggatcagaccgatctcatgnnnnnnngagcttcctctttttgttatg 401  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  4292893 agaggcggaggaaatgaaaagaggaataaagactaaaaacatgaaaaacatttggatcagaccgatctcatgtttttttgagcttcctctttttgttatg 4292992  T
Q  402 atactaataaaattcatggcattgaaagggtacttc 437  Q
    ||||||||||||||||||||||||||||||||||||    
T  4292993 atactaataaaattcatggcattgaaagggtacttc 4293028  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 4292598 - 4292748
Alignment:
Q  7 taaataatactactcaataaaaatttgccatcgcatcaacttgatgttaacatctagaatttctcatgtgatcttgatttttgggtgtgtggattttaaa 106  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4292598 taaataacactactcaataaaaatttgtcatcgcatcaacttgatgttaacatctagaatttctcatgtggtcttgatttttgggtgtgtggattttaaa 4292697  T
Q  107 atgtttttgtgtttatcaattcacactcaaaatctagaatttctctcgtgg 157  Q
    |||||||||||||||||||||| | ||||||||||  ||||||||||||||    
T  4292698 atgtttttgtgtttatcaattcgcgctcaaaatctctaatttctctcgtgg 4292748  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 204 - 343
Target Start/End: Complemental strand, 4535751 - 4535612
Alignment:
Q  204 caattcactagctctattaagctatattaaggagaaactttagtaggagtctttctttcattttccctcaaattataatatgtgatggtataacttatag 303  Q
    ||||||||||| |||||| |||||||||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  4535751 caattcactagatctattcagctatattatggagaaactttaataagagtctttctttcattttctctcaaattataatatgtgatggtataacttatac 4535652  T
Q  304 aggcggaggaaataaaaagaggaataaagactaaaaacat 343  Q
     || ||||||||  |||||||||| |||||||||||||||    
T  4535651 tggtggaggaaaagaaaagaggaagaaagactaaaaacat 4535612  T

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Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 343
Target Start/End: Complemental strand, 4526004 - 4525863
Alignment:
Q  202 accaattcactagctctattaagctatattaaggagaaactttagtaggagtctttctttcattttccctcaaattataatatgtgatggtataacttat 301  Q
    ||||||||||| | |||||| | |||||||||||||||||||||||| |||| ||||||  ||||||||||| |||||||||||||||||||||||||||    
T  4526004 accaattcactggatctattcaactatattaaggagaaactttagtaagagtatttcttatattttccctcatattataatatgtgatggtataacttat 4525905  T
Q  302 agaggcggaggaaataaaaagaggaataaagactaaaaacat 343  Q
    | | ||||||||||  || ||||||| |||||||||||||||    
T  4525904 acatgcggaggaaaagaagagaggaagaaagactaaaaacat 4525863  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 4527597 - 4527738
Alignment:
Q  202 accaattcactagctctattaagctatattaaggagaaactttagtaggagtctttctttcattttccctcaaattataatatgtgatggtataacttat 301  Q
    ||||||||||||  |||||| |||||||||||||||||| ||||||| |||| |||||||| ||||  || ||||||||||||||||| ||||||||| |    
T  4527597 accaattcactatatctatttagctatattaaggagaaaatttagtaagagtttttctttctttttttcttaaattataatatgtgatcgtataacttct 4527696  T
Q  302 agaggcggaggaaataaaaagaggaataaagactaaaaacat 343  Q
    | | | ||| || |  |||||||| | |||||||||||||||    
T  4527697 acaagtggatgataagaaaagagggagaaagactaaaaacat 4527738  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 4535894 - 4535794
Alignment:
Q  53 ttaacatctagaatttctcatgtgatcttgatttttgggtgtgtggattttaaaatgtttttgtgttt-atcaattcacactcaaaatctagaatttctc 151  Q
    |||| |||||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||    
T  4535894 ttaaaatctagaatttctcatttggtattgattttttgatgtgtggattttaaaatgtttttgtgtttaaccaattcacgcttaaaatctagaatttctc 4535795  T
Q  152 t 152  Q
    |    
T  4535794 t 4535794  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 4537135 - 4537211
Alignment:
Q  80 ttgatttttgggtgtgtggattttaaaatgtttttgtgtttatcaattcacactcaaaatctagaatttctctcgtgg 157  Q
    ||||||||||||||||||||||||||||||||| ||| || | ||||||||| |||||||||||||||||||||||||    
T  4537135 ttgatttttgggtgtgtggattttaaaatgtttgtgt-ttaaccaattcacattcaaaatctagaatttctctcgtgg 4537211  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 19411657 - 19411798
Alignment:
Q  202 accaattcactagctctattaagctatattaaggagaaactttagtaggagtctttctttcattttccctcaaattataatatgtgatggtataacttat 301  Q
    |||| |||||||| ||||||||||||||||||||  |||  |||| | |||| |||||| | |||||||| |||||||| |||||| ||| |||||||||    
T  19411657 accatttcactagatctattaagctatattaagggaaaaaattaggatgagtttttcttcctttttccctaaaattatactatgtggtggcataacttat 19411756  T
Q  302 agaggcggaggaaataaaaagaggaataaagactaaaaacat 343  Q
    | ||| ||| ||||  |||||||||| ||||| |||||||||    
T  19411757 acaggtggatgaaaagaaaagaggaagaaagattaaaaacat 19411798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 4526143 - 4526041
Alignment:
Q  53 ttaacatctagaatttctcatgtgatcttgatttttgggtgtgtggattttaaaatgtttttgtgt-ttatcaattcacactcaaaatctagaatttctc 151  Q
    |||| ||||| ||||||||||  | ||||||||||||||||||||||||||||||||   |||||| | | ||||| || ||||||||||||||||||||    
T  4526143 ttaaaatctataatttctcatccggtcttgatttttgggtgtgtggattttaaaatg---ttgtgtctaaccaattgacgctcaaaatctagaatttctc 4526047  T
Q  152 tcgtgg 157  Q
    ||||||    
T  4526046 tcgtgg 4526041  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 4527450 - 4527555
Alignment:
Q  53 ttaacatctagaatttctcatgtgatcttgatttttgggtgtgtggattttaaaatgtttttgtgttt-atcaattcacactcaaaatctagaatttctc 151  Q
    |||| ||||||||||| || |||| | ||||||||  |||||||  ||||||||||| |||||||||| | |||||||| ||||||||||||||||||||    
T  4527450 ttaaaatctagaatttttcttgtggtattgattttaaggtgtgtttattttaaaatggttttgtgtttaaccaattcacgctcaaaatctagaatttctc 4527549  T
Q  152 tcgtgg 157  Q
    | ||||    
T  4527550 tggtgg 4527555  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 19411514 - 19411606
Alignment:
Q  59 tctagaatttctcatgtgatcttgatttttgggtgtgtggattttaaaatgtttttgtgttt-atcaattcacactcaaaatctagaatttct 150  Q
    |||| |||||||| |||| | ||  ||||||| |||||||||||||| |||| ||||||||| | | ||||||||||||||||| ||||||||    
T  19411514 tctacaatttctcttgtggtattattttttggatgtgtggattttaatatgtatttgtgtttaacccattcacactcaaaatctggaatttct 19411606  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 4527767 - 4527820
Alignment:
Q  381 gagcttcctct-ttttgttatgatactaataaaattcatggcattgaaagggta 433  Q
    ||||||||||  |||||||||| ||||| ||||||||||| |||||||||||||    
T  4527767 gagcttcctcccttttgttatggtactagtaaaattcatgtcattgaaagggta 4527820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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