View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_15 (Length: 390)
Name: NF13208_high_15
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 40396430 - 40396075
Alignment:
| Q |
20 |
gatattgcttgcagttttgcctcaacaagggaagcagttgttccattcaatgaattggcttgaatcacatgctttagatttggaaaatttaactgagcac |
119 |
Q |
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| T |
40396430 |
gatattgcttgcagttttgcctcaacaagggaagcagtggttccattcaatgaattggcttgaatcacatgctttagatttggaaaatttaactgagcac |
40396331 |
T |
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| Q |
120 |
attctcctcttagtatatatgctgctgtatcatatgcaattgcagcatcttcagctgtttcaaatgtccctaaccagaccctagtcctgtttcttggtag |
219 |
Q |
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| T |
40396330 |
attctcctcttagtatatatgctgctgtatcatatgcaattgcagcatcttcagctgtttcaaatgtccctaaccagaccctagtcctgtttcttggtag |
40396231 |
T |
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| Q |
220 |
cctaatttcagcaacccattttccccaatgtctctgcctcacccctttaaaaagcttccctcttgtaccatacttcataggttgagtctttgtggcactc |
319 |
Q |
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| T |
40396230 |
cctaatttcagcaacccattttccccaatgtctctgcctcacccctttaaaaagcttccctcttgtaccatacttcataggttgagtctttgtggcactc |
40396131 |
T |
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| Q |
320 |
aaccaattctcattgaaagacttggattgtagatttgccatcatattcctgtccat |
375 |
Q |
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| T |
40396130 |
aaccaattctcattgaaagacttggattgtagatttgttatcatattcctgtccat |
40396075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 3562546 - 3562492
Alignment:
| Q |
213 |
ttggtagcctaatttcagcaacccattttccccaatgtctctgcctcaccccttt |
267 |
Q |
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| T |
3562546 |
ttggaagcctaatttcagatacccattttccccattttctcttcctcaccccttt |
3562492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 3573790 - 3573738
Alignment:
| Q |
213 |
ttggtagcctaatttcagcaacccattttccccaatgtctctgcctcacccct |
265 |
Q |
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|||| ||||||||||||| |||||||||||||| | ||||| |||||||||| |
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| T |
3573790 |
ttggaagcctaatttcagatacccattttccccattttctcttcctcacccct |
3573738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 3589082 - 3589030
Alignment:
| Q |
213 |
ttggtagcctaatttcagcaacccattttccccaatgtctctgcctcacccct |
265 |
Q |
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| T |
3589082 |
ttggaagcctaatttcagatacccattttccccattttctcttcctcacccct |
3589030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 38337660 - 38337569
Alignment:
| Q |
161 |
gcagcatcttcagctgtttcaaatgtccctaaccagaccctagtcctgtttcttggtagcctaatttcagcaacccattttccccaatgtct |
252 |
Q |
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| T |
38337660 |
gcagcatcttctgcagtatcaaatgttcctaaccacaaacgagttctgtttcgaggtagacgaatttcagcaacccattttccccaatgtct |
38337569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 25985971 - 25985922
Alignment:
| Q |
227 |
tcagcaacccattttccccaatgtctctgcctcacccctttaaaaagctt |
276 |
Q |
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|||||||||||||||||||||||||| ||||| || ||| || ||||||| |
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| T |
25985971 |
tcagcaacccattttccccaatgtctttgccttacacctctataaagctt |
25985922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 1726314 - 1726258
Alignment:
| Q |
139 |
tgctgctgtatcatatgcaattgcagcatcttcagctgtttcaaatgtccctaacca |
195 |
Q |
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||||||| ||||||||| |||| |||||||| |||||||||||||| |||||||| |
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| T |
1726314 |
tgctgcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaacca |
1726258 |
T |
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