View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_22 (Length: 317)
Name: NF13208_high_22
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_22 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 2675101 - 2675406
Alignment:
| Q |
16 |
atgggcgtatactcgagaaaaataactagtgctgtgatattataagaattgtgctctttattcaaatagttttgctcgttctaaaa---aatgatcaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
2675101 |
atgggcgtatactcgagaaaaataactagtgctgtgatattataagaattctgctctttattcaaatagttttgttcgttctcaaagtaaatgatcaaaa |
2675200 |
T |
|
| Q |
113 |
tagtcctacgcatgttaactcacgctagttttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacacttt |
212 |
Q |
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||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2675201 |
tagccctacccatgttaactcacgctagctttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacacttt |
2675300 |
T |
|
| Q |
213 |
agttgcatattttttaatatattccgaagcaa-cctatcataataaagtacctctagccttactcgttggttatacnnnnnnnaatatattatgaagcaa |
311 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |
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| T |
2675301 |
ggttgcacattttttaatatattccgaagcaaccctatcataataaagtacctctagccttacacgttggttatactttttttaatatattatgaaacaa |
2675400 |
T |
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| Q |
312 |
ccctat |
317 |
Q |
| |
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|||||| |
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| T |
2675401 |
ccctat |
2675406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 9538606 - 9538803
Alignment:
| Q |
126 |
gttaactcacgctagttttcttcctttt-atttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacacttta----gttgcat |
220 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| | |
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| T |
9538606 |
gttaactcacgctagttttcttattttttatttagcttccttcaaagcttcattatgagtgtcggcaatattctttctcttatactttgattggttgaac |
9538705 |
T |
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| Q |
221 |
attttttaatatattccgaagcaacc-tatcataataaagtacctctagccttactcgttggttatacnnnnnnnaatatattatgaagcaaccctat |
317 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
9538706 |
attttttaatatattctgaagcaaccctatcataataaagttcctctagccttacacattggttatacattttttaatatattatgaagcaaccctat |
9538803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 135 - 317
Target Start/End: Original strand, 3539773 - 3539956
Alignment:
| Q |
135 |
cgctagttttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacactttagttgcatattttttaatatat |
234 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3539773 |
cgctaattttcttacttttatttagcttccttcaaagcttcattatgagtgtcggcaatattctttctcttacactttggttgcacattttttaatatat |
3539872 |
T |
|
| Q |
235 |
tccgaagcaa-cctatcataataaagtacctctagccttactcgttggttatacnnnnnnnaatatattatgaagcaaccctat |
317 |
Q |
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|| ||||||| |||||||||||||||||| ||||||||||| | ||| |||||| ||||||||||||||||||||||| |
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| T |
3539873 |
tctgaagcaaccctatcataataaagtacatctagccttacacattgattatacattttttaatatattatgaagcaaccctat |
3539956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 130 - 317
Target Start/End: Complemental strand, 2652884 - 2652698
Alignment:
| Q |
130 |
actcacgctagttttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacactttagttgcatattttttaa |
229 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| | ||||||||| |
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| T |
2652884 |
actcacgctggttttcttacttttatttagcttccttcaaagcttcattatgagtgtcggcaatattctttctcttacacattggttgtacattttttaa |
2652785 |
T |
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| Q |
230 |
tatattccgaagcaa-cctatcataataaagtacctctagccttactcgttggttatacnnnnnnnaatatattatgaagcaaccctat |
317 |
Q |
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||||||| ||||||| |||||||||||||||||| |||||||||| | |||||||||| | ||||| ||||||||||||||| |
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| T |
2652784 |
tatattctgaagcaaccctatcataataaagtac--ctagccttacacattggttatacattttttattatatcatgaagcaaccctat |
2652698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 26998367 - 26998282
Alignment:
| Q |
59 |
aagaattgtgctctttattcaaatagttttgctcgtt-ctaaaa--aatgatcaaaatagtcctacgcatgttaactcacgctagt |
141 |
Q |
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||||||| ||||||| || ||||| |||| |||| || |||||| ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
26998367 |
aagaattctgctcttcatccaaatggtttcgctcatttctaaaataaatgatcaaaatatccctacacatgttaactcacgctagt |
26998282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 126 - 317
Target Start/End: Complemental strand, 7203929 - 7203736
Alignment:
| Q |
126 |
gttaactcacgctagttttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctc-ttacactttagttgcatattt |
224 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||| | |||| |
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| T |
7203929 |
gttaactcacgttagttttcttacttttatttagcttccttcaaagcttcattatgagtgtcggcattattctttctctttacactttggttgtacattt |
7203830 |
T |
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| Q |
225 |
tttaatatattccgaagcaa-cctatcataataaagtacctctagccttactcgttggttatacnnnnnnnaatatattatgaagcaaccctat |
317 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||| |
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| T |
7203829 |
tttaatatattccgaagaaaccctatcataataaagtacctctagccttacacattagttatacattttttaatatattatgaagcaaccctat |
7203736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 7203986 - 7203946
Alignment:
| Q |
101 |
aaatgatcaaaatagtcctacgcatgttaactcacgctagt |
141 |
Q |
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|||||||||||||| |||||||||||||||||| |||||| |
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| T |
7203986 |
aaatgatcaaaatacccctacgcatgttaactcatgctagt |
7203946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 19931648 - 19931793
Alignment:
| Q |
126 |
gttaactcacgctagttttcttccttttatttagcttccttcaaagcttcattatgagtgtcagcaatattctttctcttacactttagttgcatatttt |
225 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||| |
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| T |
19931648 |
gttaactcacgctagttttcttacttttatttagcttccttcaaagctttattatgagtgtcggcaatattctttctcttacactttggttgcacatttt |
19931747 |
T |
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| Q |
226 |
ttaatatattccgaagcaa-cctatcataataaagtacctctagcc |
270 |
Q |
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|||||||||| ||||||| |||||||||||||| || |||||||| |
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| T |
19931748 |
ttaatatattttgaagcaatcctatcataataaaataactctagcc |
19931793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 24899101 - 24899058
Alignment:
| Q |
101 |
aaatgatcaaaatagtcctacgcatgttaactcacgctagtttt |
144 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
24899101 |
aaatgaccaaaatactcctacgcatgttaactcacgctagtttt |
24899058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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