View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_26 (Length: 287)
Name: NF13208_high_26
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 7487895 - 7488146
Alignment:
| Q |
16 |
atggcgattgccgtatgaactgcttataatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaagga |
115 |
Q |
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| T |
7487895 |
atggcgattgccgtatgaactgcttataatccaatgataaacggtgttaacaagagtgttatatctggacggacattggcgtgtgatcttagtaaaagga |
7487994 |
T |
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| Q |
116 |
agaggatgttcagttggggtccaagagttggtacttaaattataaacttccgctgatctcatagttccaccataactagtatggagtttcacaactttga |
215 |
Q |
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| T |
7487995 |
agaggatgttcagttggggtccaagagttggtacttaaattataaacttccgctgatctcatagttccaccataactagtatggagtttcacaactttga |
7488094 |
T |
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| Q |
216 |
agttgatgttgttgggatcatcggcaccaaaaccatacatgcatgagtcgtt |
267 |
Q |
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| T |
7488095 |
agttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgtt |
7488146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 7873422 - 7873373
Alignment:
| Q |
42 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacat |
91 |
Q |
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| T |
7873422 |
taatccaatgataaacgccgttaacaagagtgttatatctagaaggacat |
7873373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 7475205 - 7475264
Alignment:
| Q |
196 |
atggagtttcacaactttgaagttgatgttgttgggatcatcggcaccaaaaccatacat |
255 |
Q |
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| T |
7475205 |
atggagtttcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccatacat |
7475264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 7495390 - 7495516
Alignment:
| Q |
42 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaaggaagaggatgttcagttggggtccaaga |
141 |
Q |
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| T |
7495390 |
taatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcgtgatgatagttaaaggatgaggatgttgagtaggggtccataa |
7495489 |
T |
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| Q |
142 |
gttggtacttaaattataaacttccgc |
168 |
Q |
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| T |
7495490 |
tttagtacttagattataaacttccgc |
7495516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 6943953 - 6943898
Alignment:
| Q |
199 |
gagtttcacaactttgaagttgatgttgttgggatcatcggcaccaaaaccataca |
254 |
Q |
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| T |
6943953 |
gagtttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
6943898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 6944128 - 6944049
Alignment:
| Q |
42 |
taatccaatgataaacggtgttaacaagagtgttatatctagacggacattggtgtgtgatcttagtacaaggaagagga |
121 |
Q |
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| T |
6944128 |
taatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggagga |
6944049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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