View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_3 (Length: 746)
Name: NF13208_high_3
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 597; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 22 - 658
Target Start/End: Complemental strand, 14011682 - 14011046
Alignment:
| Q |
22 |
atagagtatcatccgtacgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagtta |
121 |
Q |
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| T |
14011682 |
atagagtatcatccgtacgtttcatgtgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagtta |
14011583 |
T |
|
| Q |
122 |
agaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagtt |
221 |
Q |
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| T |
14011582 |
agaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagtt |
14011483 |
T |
|
| Q |
222 |
ctttacaaccagtggtgaatgttatagccatttggatactatacacttgggcgtagattaaattgccatttgcatggaaattgtaagtttagtttattat |
321 |
Q |
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| T |
14011482 |
ctttacaaccagtggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccatttgcatggaaattgtaagtttagtttattat |
14011383 |
T |
|
| Q |
322 |
tttatgaaaacgacttagcaccttctgctttgaattagtgtattaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcaggtatt |
421 |
Q |
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| T |
14011382 |
tttatgaaaacgatttagcaccttctgctttgaattagtgtattaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcagatatt |
14011283 |
T |
|
| Q |
422 |
tcttgagaaaattgaaatatgtgaaagaaaagcaatgggcaagtgttagccatgaatcaggtatgcacattgtattagttttccttatgttaggtgaatt |
521 |
Q |
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| T |
14011282 |
tcttgagaaaattgaaaaatgtgaaagaaaagcaatgggcaagtgttagccatgaatcaggtatgcacattgtattagttttccttatgttaggtgaatt |
14011183 |
T |
|
| Q |
522 |
gctccgttggattttatgcttagcgttgaattatctcttggcctctttgtggggttctttctttttgtttattcataaacaaagcatggctagaatcaaa |
621 |
Q |
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| T |
14011182 |
gctccgttgaattttatgcttagcgttgaattatctcttggcctatttgttgagttctttctttttgtttattcataaacaaagcatggctagaatcaaa |
14011083 |
T |
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| Q |
622 |
gccataaattgaaggtaaaatagaaacctcatttcta |
658 |
Q |
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| T |
14011082 |
gccataaattgaaggtaaaatagaaacctgatttcta |
14011046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 657 - 736
Target Start/End: Complemental strand, 14011019 - 14010940
Alignment:
| Q |
657 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
736 |
Q |
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| T |
14011019 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
14010940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 3882245 - 3882515
Alignment:
| Q |
22 |
atagagtatcatccgtacgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaagtta |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882245 |
atagagtatcatccgtacgtttcatgtgagagataccgacaattcaaggatgacccggattcttctctgagggattggtgcaaagggaaagaacaagtta |
3882344 |
T |
|
| Q |
122 |
agaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttagagtt |
221 |
Q |
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| T |
3882345 |
agaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaagtgtggaaaacatatttgctgggtttgcttagagtt |
3882444 |
T |
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| Q |
222 |
ctttacaaccagtggtgaatgttatagccatttggatactatacacttgggcgtagattaaattgccattt |
292 |
Q |
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| T |
3882445 |
ctttacaaccagcggtgaatgttatagccatatggatactatacacttgggcgtagattaaattgccattt |
3882515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 489 - 658
Target Start/End: Original strand, 3882763 - 3882921
Alignment:
| Q |
489 |
cattgtattagttttccttatgttaggtgaattgctccgttggattttatgcttagcgttgaattatctcttggcctctttgtggggttctttctttttg |
588 |
Q |
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| T |
3882763 |
cattgtattagttttccttttgttaggtgaattgctccgttggattttatgcttagcgtt-----------tggcctctttgtggggttctttctttttg |
3882851 |
T |
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| Q |
589 |
tttattcataaacaaagcatggctagaatcaaagccataaattgaaggtaaaatagaaacctcatttcta |
658 |
Q |
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| T |
3882852 |
tttattcataaacaaagcatggctagaatcaaagccataaattgaaggtaaaatagaaacctcatttcta |
3882921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 363 - 494
Target Start/End: Original strand, 3882558 - 3882689
Alignment:
| Q |
363 |
attaaatatgaaaatgtatatataacaagcttcttttgcaattaactgttgcaggtatttcttgagaaaattgaaatatgtgaaagaaaagcaatgggca |
462 |
Q |
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|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882558 |
attaaatatgaaaaagcatatataccaagcttcttttgcaattaactgttgcaggtatttcttgagaaaattgaaatatgtgaaagaaaagcaatgggca |
3882657 |
T |
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| Q |
463 |
agtgttagccatgaatcaggtatgcacattgt |
494 |
Q |
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| T |
3882658 |
agtgttagccatgaatcaggtatgcacattgt |
3882689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 39317151 - 39316923
Alignment:
| Q |
18 |
ccacatagagtatcatccgtacgtttcatgtgagagataccgacaattcaaggatgatccggattcttctctgagggattggtgcaaagggaaagaacaa |
117 |
Q |
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|||| ||||||||||||| ||| ||||||| |||||||||||| || |||||||||| || || || ||||||| ||| ||||| ||||||||||||||| |
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| T |
39317151 |
ccacttagagtatcatccatacctttcatgcgagagataccgagaactcaaggatgacccagactcatctctgaaggagtggtgtaaagggaaagaacaa |
39317052 |
T |
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| Q |
118 |
gttaagaattgcccggcatgtgggcatgtaattgagaaggtagatgggtgcaatcacattgagtgcaaatgtggaaaacatatctgctgggtttgcttag |
217 |
Q |
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| T |
39317051 |
gtcaagagctgttttgcttgtgggcaaataattgagaagatagatgggtgcaatcacgttgagtgcaagtgcggaaaacatgtctgctgggtttgcttgg |
39316952 |
T |
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| Q |
218 |
agttctttacaaccagtggtgaatgttat |
246 |
Q |
| |
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|| ||||||||| |||| |||||||||| |
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| T |
39316951 |
agatctttacaagtagtgatgaatgttat |
39316923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 657 - 736
Target Start/End: Original strand, 3882948 - 3883027
Alignment:
| Q |
657 |
tattgttaacgaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
736 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882948 |
tattgttaacaaacaaaccgaaaactaaagatactttaggaaccttcttttgatggtttgcttgtgtttttatcattcat |
3883027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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