View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_high_6 (Length: 689)
Name: NF13208_high_6
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 4 - 342
Target Start/End: Original strand, 39868301 - 39868634
Alignment:
| Q |
4 |
aatatgggaaatagctgtcaacatgtattaaaagcataggtatatannnnnnnnnnnnncaggaattcaacttgaagtcagttcagagaactaaagtggt |
103 |
Q |
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| T |
39868301 |
aatatgggaaatagctgtcaacatgtattaaaagcataggtatatatttttt-------caggaattcaacttgaagtcagttcagagaactaaagtggt |
39868393 |
T |
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| Q |
104 |
cagtggtcaattaatgaatgatatgtgtacaaagacagagggtttagggacacaaagtgtgagttgaaggtaaaaagcatatcttgcagatttgctaatg |
203 |
Q |
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| T |
39868394 |
caatggtcaattaatgaattatatgtgcacaaagtcagagtgtttagggacacaaagtgtgagttgaaggtaaaa-gcatatcttgcagatttgctaatg |
39868492 |
T |
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| Q |
204 |
gaccatatggagtatatatcaattgggatatttttgttttggaagctgatatagtggacaagaaaattttattcgctagtcatgctcagaatattaattt |
303 |
Q |
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| T |
39868493 |
gaccatttggagtatatatcaattgggatatttttgttttggaagctgatatagtggacaagaaaattttattcgctagtcatgctcagaatattaattt |
39868592 |
T |
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| Q |
304 |
ttagtg---ataaataatgttgtttgaaacgaatcacagtaa |
342 |
Q |
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| T |
39868593 |
ttagtgataataaatattgttgtttgaaacgaatcacagtaa |
39868634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 340 - 689
Target Start/End: Original strand, 39868731 - 39869077
Alignment:
| Q |
340 |
taatttaactaagaccaatgctatttctccattgacatgttgtcccgaattactagcaaaaatcaattggccaataaaactccacaaatcaagcaaggta |
439 |
Q |
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| T |
39868731 |
taatttaactaagaccaatgctatttctccattgacatgttgtcccgaattactagcaaaaatcaattggccaataaaactccacaaattaagcaaggta |
39868830 |
T |
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| Q |
440 |
cgtggaggagcataagttagagaaaatattgagacatttcatattgtaaaactctcgggacaataaatgtcgcaagacatatagcaatatcctttaacta |
539 |
Q |
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| T |
39868831 |
cgtggtggagcataatttagagaaaatattgatacatcttatatcgtaaaactctcgggacaataaatgtcgcaagac--atagcaatatcctttaacta |
39868928 |
T |
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| Q |
540 |
attcatcaggaggaaattaaattgatgaatataatgcataaaagatcaaaggaaaaagactaattggccaacagnnnnnnnnnnttaaaatattagtgag |
639 |
Q |
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| T |
39868929 |
attcatcaggaggaaattaaatcgatgaatacaaagcatacaagaccaaaggaaaaagactaattggccaacagaaaaagaaaa--aaaaaattagtgag |
39869026 |
T |
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| Q |
640 |
gcaacaatgatgttagaaactcttcacaaacatcatttc-tatgtcattac |
689 |
Q |
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| T |
39869027 |
gcaacaatgatgttagaaactcttcacaaacatcatttcttatgtcattac |
39869077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 33397586 - 33397554
Alignment:
| Q |
488 |
aaactctcgggacaataaatgtcgcaagacata |
520 |
Q |
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| T |
33397586 |
aaactctcgggacaataaatgtctcaagacata |
33397554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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