View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_13 (Length: 444)
Name: NF13208_low_13
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 33770462 - 33770044
Alignment:
| Q |
10 |
attatactgtctcatgttcattagcataagtattctagattagcgcacccggtttcgcgggtgcagaaaagcacaatgactgataagcaaaacttgatgt |
109 |
Q |
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| T |
33770462 |
attatactgtctcatgttcattagcataagtattctagattagcgcacccggtttcgcgggtgcaaaaaaacacaatgactgataagcaaaacttgatgt |
33770363 |
T |
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| Q |
110 |
taacaggcggttaagcttatttgcaacttagggtaagcacaagcatcctgaattatttctcaattgaataatcaaccataacaacttatgtaggcccttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33770362 |
taacaggcggttaagcttatttgcaacttagggtaagcacaagcatcctgaattatttctcaattgaataatcaaccataacaacttatgtaggcccttt |
33770263 |
T |
|
| Q |
210 |
gttttaatttgtttttgagtttggaccagaatttcaatcattacgaaattgcattttgcagtaaaataactatttgatgacaaagttattaccaatgcag |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33770262 |
gttttaatttgtttttgagtttggaccagaatttgaatcattacgaaattacattttgcagtaaaataactatatgatgacaaagttattaccaatgcag |
33770163 |
T |
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| Q |
310 |
tgatgttctgtgtgtaagcatctaaatgcagaagctcatgtttgaaactttggttggtttggtttgcaactcaatcgtctcttttcggtgggccgttgag |
409 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33770162 |
tgatgttttgtgtgtaagcatctaaatgcagaagctcatgtttgaaactttggttggtttggtttgcaactcaatcgtctcttttcggtgggccgttgag |
33770063 |
T |
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| Q |
410 |
ggtcactgcaacaaacaac |
428 |
Q |
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|||| |||||||| |||| |
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| T |
33770062 |
ggtcgttgcaacaagcaac |
33770044 |
T |
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