View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_20 (Length: 339)
Name: NF13208_low_20
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 36541709 - 36542018
Alignment:
| Q |
13 |
gtgagatgaatccaaactagcttgctttgtcaaattagaggaaacgttgttcttgtgaatggccattatatttgtaacatccaccataaatcccatacct |
112 |
Q |
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| T |
36541709 |
gtgaaatgaatccaaactagcttgctttgtcaaattagtggaaacgttgttcttgtgaatggccatgatatttgtaacatccaccataaatcccataccc |
36541808 |
T |
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| Q |
113 |
tttaaaaaacctttcttaatgaattgatattctccactctcttcttctactttgttcattaacccattgcaagtcattttctcaattggatgcatttttt |
212 |
Q |
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| T |
36541809 |
tttaaaaaacctttcttaatgaattgatattctccactctcttcttctactttgttcattaacccattgcaagtcattttctcaattggatgcatttttt |
36541908 |
T |
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| Q |
213 |
cctcactaaaaataagagtttagaattacgcgattagttatgacatgattcatatatgcatgaatt-gnnnnnnnngtgttcaaacttgaatattttaag |
311 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36541909 |
cctcactaaaaataagagtttagaattacgtgataagttatgacatgattcatatatgcatgaattataaaataaagtgttcaaacttgaatattttaag |
36542008 |
T |
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| Q |
312 |
agtttaggtt |
321 |
Q |
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|||||||||| |
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| T |
36542009 |
agtttaggtt |
36542018 |
T |
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