View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_23 (Length: 304)
Name: NF13208_low_23
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 33576769 - 33577045
Alignment:
| Q |
10 |
acatcatcaaaagacttgtaaacaacaaacatgaatatcctcaaaaaattataactatgatgatgctcaagaggcagtatttacattaccgcgtccacac |
109 |
Q |
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| T |
33576769 |
acatcatcaaaagacttgtaaacaacaaacatgaatatcctcaaaaaattataactatgatgatgctcaagaggcagtatttacattaccgcgtccacac |
33576868 |
T |
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| Q |
110 |
aaattaacaagagtggaagcagaaaaattgcatacatcttgaaacatcgtgaatcagtatacctttcccccaccaattaagaatctgaaactgaactgaa |
209 |
Q |
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| T |
33576869 |
aaattaacaagagtggaagcagaaaaattgcatacatcttgaaacatcgtgaatcagtatacctttcccccaccaattaagaatctgaaactgaactgaa |
33576968 |
T |
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| Q |
210 |
ctaactaattttctttgccatagtagccaatgttgccctcatcgccaaagccttcgaagtcttcacaggatcatcct |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33576969 |
ctaactaattttctttgccatagtagccaatgttgccctcatcgccaaagccttcgaagtcttcacaggatcatcct |
33577045 |
T |
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