View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_24 (Length: 291)
Name: NF13208_low_24
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 16940979 - 16941246
Alignment:
| Q |
8 |
cgaagaatattacttacacattatccataaacaaaattcaaacgacgacaacggaagataaaaatataactaaactcctttaacctttagtagggtatga |
107 |
Q |
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| T |
16940979 |
cgaagaaaattacttacacattatccataaacaaaattcaaacgacgacaacggaagataaaaatataaccaaactcctttgaccttt-gtaaggtatga |
16941077 |
T |
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| Q |
108 |
gccaaatccttacgataagaccaattttatttgtcacattcataataattatcaatcttgacacactacactttatataaatacctccaaaactttacat |
207 |
Q |
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| T |
16941078 |
gccaaatccttacgataagaccaattttatttgtcacattcataataattatcaatcttgacacactacactttatataaatacctccaaaactttggat |
16941177 |
T |
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| Q |
208 |
gcattcatcaaatatttcacttggcatgtgtcctctaaatt--tctctctatatatataacattggttg |
274 |
Q |
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| T |
16941178 |
gcattcatcaaatatttcacttggcatgtgtcctctaaatttctctctctatatatataacattggttg |
16941246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 17011644 - 17011911
Alignment:
| Q |
8 |
cgaagaatattacttacacattatccataaacaaaattcaaacgacgacaacggaagataaaaatataactaaactcctttaacctttagtagggtatga |
107 |
Q |
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| T |
17011644 |
cgaagaaaattacttacacattatccataaacaaaattcaaacgacgacaacggaagataaaaatataaccaaactcctttgaccttt-gtaaggtatga |
17011742 |
T |
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| Q |
108 |
gccaaatccttacgataagaccaattttatttgtcacattcataataattatcaatcttgacacactacactttatataaatacctccaaaactttacat |
207 |
Q |
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| T |
17011743 |
gccaaatccttacgataagaccaattttatttgtcacattcataataattatcaatcttgacacactacactttatataaatacctccaaaactttggat |
17011842 |
T |
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| Q |
208 |
gcattcatcaaatatttcacttggcatgtgtcctctaaatt--tctctctatatatataacattggttg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
17011843 |
gcattcatcaaatatttcacttggcatgtgtcctctaaatttctctctctatatatataacattggttg |
17011911 |
T |
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