View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_32 (Length: 213)
Name: NF13208_low_32
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 17110488 - 17110693
Alignment:
| Q |
1 |
ttctaacactatctgatctgtgtttgctgatctctacttatcgtaacacaaaagtttaatattttcaaatattcatttaacgttgaatatcactcgtatt |
100 |
Q |
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| T |
17110488 |
ttctaacactatctgatctgtgtttgctgatctctacttatcgtaacacaa--gtttaatattttcaaatattcatttaaccttgaatttcactcgtatt |
17110585 |
T |
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| Q |
101 |
gctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgtcaaaacgtgtacaatataaaggtaatgtgttttgttattaaacatg |
200 |
Q |
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| T |
17110586 |
gctagggatgggtatggagctatcaggattctggaacttggtttcttgcattgtcaaaaagtgtacaatataaaggtaatgtgttttgttattaaacatg |
17110685 |
T |
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| Q |
201 |
aatgatat |
208 |
Q |
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|||||||| |
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| T |
17110686 |
aatgatat |
17110693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 16980058 - 16980212
Alignment:
| Q |
56 |
ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgt- |
154 |
Q |
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| T |
16980058 |
ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaacttaatttcttacatacta |
16980157 |
T |
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| Q |
155 |
-caaaacgtgtacaatataaaggtaatgtgttttgttattaaacatgaatgatat |
208 |
Q |
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| T |
16980158 |
aaaaaaaatatactatataaagataatttgttttattattaatcatgaatgatat |
16980212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 17031930 - 17032084
Alignment:
| Q |
56 |
ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaacttggtttcttgcatcgt- |
154 |
Q |
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| T |
17031930 |
ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaacttaatttcttacatacta |
17032029 |
T |
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| Q |
155 |
-caaaacgtgtacaatataaaggtaatgtgttttgttattaaacatgaatgatat |
208 |
Q |
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| T |
17032030 |
aaaaaaaatatactatataaagataatttgttttattattaatcatgaatgatat |
17032084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 17050269 - 17050352
Alignment:
| Q |
56 |
ttaatattttcaaatattcatttaacgttgaatatcactcgtattgctagggatgggtatggagctatcaggattctggaactt |
139 |
Q |
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| T |
17050269 |
ttaatattttcaaatattgatttaactttgaatttcatttgtacagctagtgatgggtattgagctatctggattctagaactt |
17050352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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