View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_4 (Length: 732)
Name: NF13208_low_4
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 358 - 724
Target Start/End: Original strand, 29931543 - 29931909
Alignment:
| Q |
358 |
acgattgacactcactgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttagga |
457 |
Q |
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| T |
29931543 |
acgattgacactcaccgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttagga |
29931642 |
T |
|
| Q |
458 |
agtctccaataatcaattgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcct |
557 |
Q |
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| T |
29931643 |
agtctccaataatcaattgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcct |
29931742 |
T |
|
| Q |
558 |
cctctaaataaccaacaaacctgtgtgcagtttttggtgagaggatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaag |
657 |
Q |
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| T |
29931743 |
cctctaaataaccaacaaacctgtgtgcagtttttggtgagagtatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaag |
29931842 |
T |
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| Q |
658 |
cctttcatgccaacttggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgct |
724 |
Q |
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| T |
29931843 |
cctttcatgccaacttggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgct |
29931909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 374 - 724
Target Start/End: Original strand, 29934283 - 29934633
Alignment:
| Q |
374 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctccaataatcaa |
473 |
Q |
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| T |
29934283 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgacaacatccttaagagttgcatcatttggaagtctccaataatcaa |
29934382 |
T |
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| Q |
474 |
ttgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcctcctctaaataaccaac |
573 |
Q |
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| T |
29934383 |
tagcaatagcaggagcaggtacattttcaactttaccactttcaattgcattcagatattgtgtgtatgaaatcacagcttcctcctctaaataaccaac |
29934482 |
T |
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| Q |
574 |
aaacctgtgtgcagtttttggtgagaggatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaagcctttcatgccaactt |
673 |
Q |
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| T |
29934483 |
aaacctatgtgctatttttggtgagaggatgtaaaacacaaagaatccattaaagaaaacaccttgtgcagtaataaccaaaagcctctcatgccaactt |
29934582 |
T |
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| Q |
674 |
ggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgct |
724 |
Q |
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||||| |||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
29934583 |
ggtttcacaagctcaaccattgtcatcaaatgcatcctttcattctctgct |
29934633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 29931202 - 29931492
Alignment:
| Q |
18 |
aagaattccgacacgaattgaaagtttagacaacaaaggctagctagaaaatagaaatcactatttgatnnnnnnn-tcgataaaaacatgactcaatga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29931202 |
aagaattccgacacgaattgaaagtttagacaacaaaggctagctagaaaatagaaatcactatttgataaaaaaaatcgataaaaacatgactcaatga |
29931301 |
T |
|
| Q |
117 |
taaccaataggagctggagcctctttcagttcttttccttgatggtgaatatcctacaaaaagatgaacacaacattcagagcaaatgaagaggaaagaa |
216 |
Q |
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| T |
29931302 |
taaccaataggagctggagcctctttcagttcttttccttgatggtgaatatcctacaaaaagatgaacacaacattcagagcaaatgaagaggaaagaa |
29931401 |
T |
|
| Q |
217 |
attaaaatcaagagtgttttaaacaaattataatgacttaaaaatgtttttcatccnnnnnnnagactaagatgatatatttatagagacg |
307 |
Q |
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| T |
29931402 |
attaaaatcaagagtgttttaaacaaattataatgacttaaaaaagtttttcatcctttttttagactaagataatatatttatagagacg |
29931492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 29933870 - 29933961
Alignment:
| Q |
106 |
tgactcaatgataaccaataggagctggagcctctttcagttcttttccttgatggtgaatatcctacaaaaagatgaacacaacattcaga |
197 |
Q |
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| T |
29933870 |
tgactcaatgataaccaacaggagctggagcctctttcaattcttttccttgatggtgaatatcctacaaaaagaagaacacaacattcaga |
29933961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 365 - 503
Target Start/End: Complemental strand, 37469856 - 37469718
Alignment:
| Q |
365 |
acactcactgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctcc |
464 |
Q |
| |
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|||||||||||||| || || || ||||||| ||| |||||||| ||||||||||| || || |||||||| || | | |||||||| ||||| |||| |
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| T |
37469856 |
acactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctcc |
37469757 |
T |
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| Q |
465 |
aataatcaattgcaatagcaggagcaggtacattttcaa |
503 |
Q |
| |
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|||| || |||||||| ||||||||||| |||||||||| |
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| T |
37469756 |
aatagtctattgcaatggcaggagcaggaacattttcaa |
37469718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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