View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13208_low_5 (Length: 695)
Name: NF13208_low_5
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13208_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 17109815 - 17110266
Alignment:
| Q |
20 |
caagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgact |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109815 |
caagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgact |
17109914 |
T |
|
| Q |
120 |
acaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109915 |
acaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatc |
17110014 |
T |
|
| Q |
220 |
aactttacagattttggggaactgtccattccttttagaaagatgcaagaaaccttatggaa-----------aggattgcgcatattcaatgtataatg |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17110015 |
aactttacagatttcggggaactgtccattccttttagaaagatgcaagaaaccttatggaaaggattgcgagaggattgcgcatattcaatgtataatg |
17110114 |
T |
|
| Q |
309 |
attgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110115 |
attgacgatcctgagagggaccaacagtcatagtgcccaacaattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggt |
17110214 |
T |
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| Q |
409 |
gcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
460 |
Q |
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| T |
17110215 |
gcagatttatattcaaatagtatttacttgaactggacccactttaaaatga |
17110266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 459 - 680
Target Start/End: Original strand, 17110288 - 17110509
Alignment:
| Q |
459 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
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| Q |
559 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
658 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
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| Q |
659 |
ttctaacactatctgatctgtg |
680 |
Q |
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|||||||||||||||||||||| |
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| T |
17110488 |
ttctaacactatctgatctgtg |
17110509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 17030355 - 17030608
Alignment:
| Q |
20 |
caagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgact |
119 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
17030355 |
caagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgact |
17030454 |
T |
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| Q |
120 |
acaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatc |
219 |
Q |
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|||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| |||| |||||| || |
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| T |
17030455 |
acaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttc |
17030554 |
T |
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| Q |
220 |
aactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
273 |
Q |
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|||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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| T |
17030555 |
aactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17030608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 17048693 - 17048946
Alignment:
| Q |
20 |
caagaaacagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgact |
119 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
17048693 |
caagaagcagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgact |
17048792 |
T |
|
| Q |
120 |
acaagggtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatc |
219 |
Q |
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|||||||||| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| |||| |||||| || |
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| T |
17048793 |
acaagggtcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttc |
17048892 |
T |
|
| Q |
220 |
aactttacagattttggggaactgtccattccttttagaaagatgcaagaaacc |
273 |
Q |
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|||| |||| || |||||||| ||| || | ||| | || ||||||||||||| |
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| T |
17048893 |
aactctacaaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17048946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 16978491 - 16978736
Alignment:
| Q |
28 |
agatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggt |
127 |
Q |
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||||||||||| |||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
16978491 |
agatgtggagttttttcctaatcaagggttgcttcctatctctcttacttatctaaatatttgtggttgtcgaaatctcaaacaacttgactacaagggt |
16978590 |
T |
|
| Q |
128 |
ctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttac |
227 |
Q |
| |
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|| || |||| ||||||||| | |||| | ||| || || ||||||||||| || | || || ||||||||||| |||| |||||| |||||| ||| |
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| T |
16978591 |
cttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtctgcctaaatccatttcaactctac |
16978690 |
T |
|
| Q |
228 |
agattttggggaactgtccattccttttagaaagatgcaagaaacc |
273 |
Q |
| |
|
| || |||||||| ||| || | ||| | || ||||||||||||| |
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| T |
16978691 |
aaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
16978736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 604 - 679
Target Start/End: Original strand, 17126147 - 17126221
Alignment:
| Q |
604 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgt |
679 |
Q |
| |
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||||||||||||||||||||||| || |||| ||||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgt |
17126221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 14313962 - 14314008
Alignment:
| Q |
29 |
gatgtggagtcttttcccaatcaagggttgattccactctctcttac |
75 |
Q |
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|||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
14313962 |
gatgtggagtcttttcccgatcaagggttgcttccacgctctcttac |
14314008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 666
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
591 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
666 |
Q |
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||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| || || |||||||||||||| |
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| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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