View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13208_low_7 (Length: 679)

Name: NF13208_low_7
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13208_low_7
NF13208_low_7
[»] chr5 (20 HSPs)
chr5 (1-669)||(28252840-28253491)
chr5 (4-228)||(15544034-15544247)
chr5 (4-228)||(28142347-28142563)
chr5 (178-256)||(17769461-17769539)
chr5 (145-234)||(18208281-18208369)
chr5 (114-195)||(34487654-34487735)
chr5 (74-228)||(23380219-23380373)
chr5 (4-87)||(26307727-26307810)
chr5 (148-256)||(24266990-24267097)
chr5 (148-256)||(24343621-24343728)
chr5 (97-157)||(32452426-32452486)
chr5 (114-231)||(27921403-27921519)
chr5 (4-75)||(29263483-29263553)
chr5 (177-255)||(20744876-20744953)
chr5 (142-195)||(26120881-26120934)
chr5 (145-211)||(19004258-19004325)
chr5 (142-209)||(32581889-32581956)
chr5 (142-199)||(24167613-24167671)
chr5 (114-228)||(32417357-32417471)
chr5 (5-46)||(32448120-32448160)
[»] chr4 (25 HSPs)
chr4 (4-218)||(19900573-19900776)
chr4 (106-234)||(15050076-15050204)
chr4 (106-234)||(15104220-15104348)
chr4 (74-228)||(20317743-20317893)
chr4 (107-223)||(22345009-22345123)
chr4 (142-256)||(17216773-17216887)
chr4 (4-195)||(40215221-40215400)
chr4 (179-255)||(13128941-13129016)
chr4 (1-213)||(20314998-20315200)
chr4 (106-175)||(23080378-23080447)
chr4 (142-245)||(21323904-21324007)
chr4 (4-90)||(9737411-9737497)
chr4 (47-206)||(25643468-25643620)
chr4 (4-66)||(1833498-1833560)
chr4 (142-199)||(13692698-13692756)
chr4 (177-234)||(13587208-13587265)
chr4 (106-195)||(22218594-22218683)
chr4 (4-64)||(11700475-11700534)
chr4 (182-256)||(15164723-15164796)
chr4 (114-228)||(19492701-19492815)
chr4 (142-199)||(13908866-13908924)
chr4 (113-199)||(25121226-25121312)
chr4 (142-227)||(10106995-10107080)
chr4 (4-91)||(15104351-15104439)
chr4 (4-36)||(22526530-22526562)
[»] chr6 (22 HSPs)
chr6 (492-659)||(3537558-3537723)
chr6 (128-229)||(20722192-20722292)
chr6 (74-256)||(34478480-34478664)
chr6 (1-228)||(9726006-9726223)
chr6 (2-90)||(28589326-28589412)
chr6 (4-82)||(24188133-24188210)
chr6 (106-227)||(15614171-15614298)
chr6 (4-256)||(28585932-28586174)
chr6 (74-185)||(9386070-9386186)
chr6 (177-256)||(8241233-8241311)
chr6 (127-228)||(31629127-31629229)
chr6 (4-65)||(23088236-23088297)
chr6 (4-131)||(7542857-7542978)
chr6 (97-193)||(9385973-9386069)
chr6 (114-228)||(26215388-26215501)
chr6 (5-66)||(17729288-17729349)
chr6 (148-227)||(25927338-25927417)
chr6 (145-215)||(12183363-12183434)
chr6 (142-199)||(9516797-9516855)
chr6 (163-237)||(15466345-15466418)
chr6 (159-211)||(5624640-5624693)
chr6 (148-199)||(21672470-21672522)
[»] chr7 (38 HSPs)
chr7 (1-256)||(20174527-20174781)
chr7 (142-253)||(2563777-2563887)
chr7 (45-227)||(23093294-23093481)
chr7 (4-94)||(5797618-5797708)
chr7 (88-199)||(15303596-15303707)
chr7 (107-227)||(2453717-2453837)
chr7 (5-228)||(10937585-10937798)
chr7 (77-228)||(33035456-33035608)
chr7 (163-243)||(5047437-5047517)
chr7 (4-94)||(21912381-21912472)
chr7 (9-225)||(9864233-9864438)
chr7 (9-66)||(18449671-18449728)
chr7 (5-78)||(18466129-18466201)
chr7 (113-229)||(9866541-9866657)
chr7 (114-228)||(21227161-21227277)
chr7 (115-227)||(26134750-26134862)
chr7 (135-227)||(9890167-9890260)
chr7 (137-233)||(9916544-9916641)
chr7 (137-233)||(9924456-9924553)
chr7 (1-66)||(36117446-36117511)
chr7 (177-256)||(1587637-1587715)
chr7 (142-244)||(16365673-16365775)
chr7 (142-227)||(7318258-7318343)
chr7 (142-196)||(7397211-7397265)
chr7 (142-228)||(17203008-17203093)
chr7 (5-78)||(9500569-9500639)
chr7 (177-234)||(9720941-9720998)
chr7 (107-195)||(2504186-2504274)
chr7 (142-194)||(5108583-5108635)
chr7 (97-227)||(18449226-18449357)
chr7 (4-94)||(21885057-21885148)
chr7 (106-199)||(2953585-2953679)
chr7 (106-199)||(10648590-10648684)
chr7 (22-76)||(16306821-16306874)
chr7 (142-199)||(31492942-31493000)
chr7 (142-194)||(3329687-3329740)
chr7 (113-189)||(9078189-9078265)
chr7 (5-65)||(14755036-14755096)
[»] chr8 (21 HSPs)
chr8 (492-645)||(22925051-22925202)
chr8 (78-227)||(26008007-26008156)
chr8 (96-194)||(15292748-15292846)
chr8 (96-194)||(15473117-15473215)
chr8 (1-228)||(24119657-24119884)
chr8 (76-194)||(28317431-28317555)
chr8 (9-228)||(5850925-5851132)
chr8 (75-194)||(14006112-14006226)
chr8 (4-56)||(17965189-17965241)
chr8 (179-256)||(24110722-24110798)
chr8 (142-199)||(44011053-44011110)
chr8 (5-227)||(14075578-14075791)
chr8 (118-189)||(17972193-17972264)
chr8 (96-227)||(31288342-31288473)
chr8 (4-64)||(5052828-5052886)
chr8 (6-66)||(15238935-15238993)
chr8 (142-194)||(24269615-24269667)
chr8 (142-199)||(29382390-29382448)
chr8 (145-190)||(30122187-30122232)
chr8 (142-194)||(24644855-24644907)
chr8 (144-199)||(30783772-30783828)
[»] chr2 (21 HSPs)
chr2 (114-228)||(8447051-8447165)
chr2 (106-227)||(12557702-12557823)
chr2 (97-234)||(32439981-32440118)
chr2 (517-620)||(2165314-2165415)
chr2 (106-199)||(25070140-25070233)
chr2 (106-256)||(8503063-8503214)
chr2 (1-187)||(15454732-15454914)
chr2 (142-208)||(17349360-17349426)
chr2 (77-198)||(25936935-25937055)
chr2 (115-227)||(18553909-18554021)
chr2 (2-188)||(27418389-27418570)
chr2 (4-78)||(30900750-30900822)
chr2 (142-228)||(17743505-17743591)
chr2 (114-256)||(18932153-18932295)
chr2 (142-199)||(20174664-20174722)
chr2 (142-199)||(29719260-29719318)
chr2 (142-195)||(32085479-32085533)
chr2 (15-91)||(28770355-28770431)
chr2 (4-76)||(19287455-19287526)
chr2 (142-194)||(23011792-23011844)
chr2 (142-193)||(25618574-25618626)
[»] chr3 (22 HSPs)
chr3 (1-256)||(7147944-7148188)
chr3 (142-256)||(12805919-12806033)
chr3 (74-199)||(27542881-27543001)
chr3 (96-234)||(21074521-21074659)
chr3 (4-225)||(23056064-23056283)
chr3 (133-234)||(21019616-21019717)
chr3 (4-75)||(20397713-20397782)
chr3 (5-194)||(8557032-8557211)
chr3 (107-199)||(20339758-20339850)
chr3 (96-227)||(25756659-25756791)
chr3 (179-256)||(932697-932774)
chr3 (148-227)||(6289888-6289967)
chr3 (163-199)||(18736722-18736758)
chr3 (97-227)||(12759371-12759502)
chr3 (145-199)||(21301930-21301985)
chr3 (148-199)||(21825904-21825955)
chr3 (142-199)||(821543-821601)
chr3 (1-78)||(13908151-13908225)
chr3 (106-227)||(28728928-28729050)
chr3 (4-65)||(6290038-6290098)
chr3 (146-199)||(31286048-31286101)
chr3 (6-66)||(821417-821476)
[»] chr1 (22 HSPs)
chr1 (113-227)||(26540880-26540994)
chr1 (4-85)||(6501454-6501534)
chr1 (115-253)||(10064573-10064710)
chr1 (4-78)||(24267683-24267756)
chr1 (75-228)||(33712647-33712801)
chr1 (142-211)||(12208601-12208671)
chr1 (142-199)||(17610285-17610343)
chr1 (107-185)||(24306950-24307028)
chr1 (142-199)||(21847646-21847703)
chr1 (106-199)||(25958121-25958214)
chr1 (4-229)||(27117619-27117834)
chr1 (106-229)||(17837500-17837623)
chr1 (106-197)||(24306299-24306390)
chr1 (565-635)||(8966485-8966555)
chr1 (142-211)||(24281277-24281347)
chr1 (142-195)||(13345365-13345419)
chr1 (142-199)||(16787755-16787813)
chr1 (142-199)||(21449101-21449159)
chr1 (142-231)||(23038041-23038129)
chr1 (257-286)||(8966660-8966689)
chr1 (159-211)||(22664206-22664259)
chr1 (1-33)||(17017612-17017644)
[»] scaffold0394 (2 HSPs)
scaffold0394 (96-234)||(13888-14029)
scaffold0394 (4-97)||(13809-13902)
[»] scaffold0606 (1 HSPs)
scaffold0606 (170-244)||(7843-7917)
[»] scaffold0016 (1 HSPs)
scaffold0016 (74-228)||(12092-12246)
[»] scaffold0006 (2 HSPs)
scaffold0006 (4-78)||(18641-18713)
scaffold0006 (4-78)||(222934-223006)
[»] scaffold0136 (1 HSPs)
scaffold0136 (4-56)||(15367-15419)
[»] scaffold0672 (1 HSPs)
scaffold0672 (1-66)||(1869-1932)
[»] scaffold0085 (1 HSPs)
scaffold0085 (128-245)||(22247-22364)
[»] scaffold0019 (1 HSPs)
scaffold0019 (4-48)||(11377-11421)
[»] scaffold0023 (1 HSPs)
scaffold0023 (106-199)||(115642-115732)
[»] scaffold0056 (1 HSPs)
scaffold0056 (215-256)||(24941-24982)
[»] scaffold0043 (1 HSPs)
scaffold0043 (142-199)||(89883-89940)


Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 28253491 - 28252840
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtttta 100  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28253491 ccactaacattttgcaatcaaaacaggtaaacttttctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtttta 28253392  T
Q  101 tttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattc 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||     
T  28253391 tttagttgttctcaaataagtaacgcgaatttcctacttggaacgataatccctgtgaatacgatattctacttacactttattacttggtaaacgattt 28253292  T
Q  201 agtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgttcgaggaggaatctgatgagagggtaaatttcgcattgcatagga 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28253291 ggtacatttgcataaatccgaccatcaagttttttgcgccgttgtcgaggattgttcgaggaggaatttgatgagagggtaaatttcgcattgcatagga 28253192  T
Q  301 tgttactagcatccaaagatgaagggaagtgcaagaactagttcaaaacatactattttgtcaagaacaaagtgttcaatctgatcgtagatagtggcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||                  |||||||||||||||||||||||||||| |||||||| ||    
T  28253191 tgttactagcatccaaagatgaagggaagtgcaagaacttgt------------------tcaagaacaaagtgttcaatctgatcgtggatagtggtaa 28253110  T
Q  401 cacggagaatctggtatttcagaaattactagattcttttaagttatccacaaaacctcatgagaagccatacaccctaggtatcggcagcagggatccc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28253109 cacggagaatctggtatttcagaaattactagattcttttaagttatccacaaaacctcatgagaagccatacaccctaggtatcggcagcagggatcct 28253010  T
Q  501 agattcgagcaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcat 600  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  28253009 agattcgagtaacactatcctgcagagttcctatctccatcggcaagcattacaaaga--agaggtactctgtgatgttcttaatatgaatgtttttcat 28252912  T
Q  601 attttacttgatagaccttgacaatttgataatgatattacttattggg--gacgagataac-tgatgatgt 669  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||||||    
T  28252911 attttacttggtagaccttgacaatttgataatgatattacttgttggggagacgagataacatgatgatgt 28252840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 15544247 - 15544034
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattt 103  Q
    |||||||| ||||||||||| ||||||| ||||||  |||||||| | ||||||||||||||| ||||||  ||| |||||||||||         ||||    
T  15544247 ctaacattttgcaatcaaaataggtaaattttgctatgttgcaaacaaattaaattgcaaaac-tctaaatactt-atcttttattt---------attt 15544159  T
Q  104 agttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagt 203  Q
      |||||  ||||||||||||||| ||| ||||||| |||||| ||||| | || ||| |||| |||||| | | |||||||||||||||||||||  ||    
T  15544158 tattgtttccaaataagtaacgcggattgcctagtttgaacgataatccctatgtatacgatactctactgacagtttattacttggtaaacgatttggt 15544059  T
Q  204 acatttgcataaatccgaccatcaa 228  Q
    ||| |||| ||||||||||||||||    
T  15544058 acacttgcctaaatccgaccatcaa 15544034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 28142563 - 28142347
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattt 103  Q
    |||||||| |||| |||| |||||| |||||| ||| ||||||||||||||||||||||| | ||||||||||  ||||||||||||      |||||      
T  28142563 ctaacattatgcagtcaagacaggtgaactttactctgttgcaaatagattaaattgcaaca-ctctaaaccc-atatcttttattt-----atttat-- 28142473  T
Q  104 agttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagat-attctactta-aactttattacttggtaaacgattca 201  Q
      |||||| |||||||||||| | |||| | ||||||||||||||||||||||||||| ||| | ||| ||||  ||||||||| ||| ||||||||| |    
T  28142472 -attgttcccaaataagtaacacaaattgcatagttggaacgacaatccatgtgaatacgataactctgcttactactttattatttgataaacgattta 28142374  T
Q  202 gtacatttgcataaatccgaccatcaa 228  Q
     |||| |||| ||||| ||||||||||    
T  28142373 atacacttgcttaaattcgaccatcaa 28142347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 17769461 - 17769539
Alignment:
Q  178 ctttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| | ||||||||||| |||||||    
T  17769461 ctttattacttggtaaacgatttggtacacttgcataaatccgaccatcaaatttttggtgccgttgtcggagattgtt 17769539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 18208281 - 18208369
Alignment:
Q  145 gacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttt 234  Q
    ||||||||||||| ||| |||| |||||||| |||||||||||| ||||||||||  ||||| |||| | ||||||||||||||||||||    
T  18208281 gacaatccatgtggatacgatactctacttacactttattactttgtaaacgatttggtacacttgcct-aatccgaccatcaagttttt 18208369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 34487735 - 34487654
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    ||||||||||||||||||   |||  | |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  34487735 aaataagtaacgcgaattgtttagacgaaacgacaatccatgtggatatgatattctacttacactttattacttggtaaac 34487654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 23380219 - 23380373
Alignment:
Q  74 ccctttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctact 173  Q
    ||||||||||||||||||||| | || |||| |||||| |||||||||| ||| | ||  || |||| || |||||||||| |||||| |||| | ||||    
T  23380219 ccctttatcttttattttattttattgttta-ttgttcccaaataagtagcgcaagttgtcttgttgaaatgacaatccatatgaatacgatagtttact 23380317  T
Q  174 taa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    ||  | ||||||||||||||||| |||  ||||| |||| |||||||||| |||||    
T  23380318 tatcagtttattacttggtaaacaatttggtacacttgcctaaatccgacaatcaa 23380373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 26307810 - 26307727
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatctttta 87  Q
    ||||||||||||||||||||||  ||||  |||||| ||||||||||||| |||||||||||||  |  |||||||||||||||    
T  26307810 ctaacattctgcaatcaaaacaactaaatcttgctctgttgcaaatagatcaaattgcaaaacccatttaccctttatctttta 26307727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 24266990 - 24267097
Alignment:
Q  148 aatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcg 247  Q
    ||||| |||| ||| |||| |||||||| |||||||||||||||||||||||  ||||| |||| | ||| |||||||||||||||| || | |||| ||    
T  24266990 aatccttgtggatacgatactctacttacactttattacttggtaaacgatttggtacacttgcct-aattcgaccatcaagtttttggcactgttgccg 24267088  T
Q  248 gggattgtt 256  Q
     ||||||||    
T  24267089 aggattgtt 24267097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 24343621 - 24343728
Alignment:
Q  148 aatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcg 247  Q
    ||||| |||| ||| |||| |||||||| |||||||||||||||||||||||  ||||| |||| | ||| |||||||||||||||| || | |||| ||    
T  24343621 aatccttgtggatacgatactctacttacactttattacttggtaaacgatttggtacacttgcct-aattcgaccatcaagtttttggcactgttgccg 24343719  T
Q  248 gggattgtt 256  Q
     ||||||||    
T  24343720 aggattgtt 24343728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 32452426 - 32452486
Alignment:
Q  97 tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtg 157  Q
    |||||||  ||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  32452426 tttattttattgttctcaaataagtaacgcgagttgcctaattggaacgacaatccatgtg 32452486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 27921403 - 27921519
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcat 213  Q
    |||||||||||| ||||| |||||||| ||| |||| ||||||  ||| ||||  ||||||| |||||||||||||  |||| |||  ||||| |||| |    
T  27921403 aaataagtaacgtgaattgcctagttgaaacaacaacccatgtatatacgatacactacttacactttattacttgacaaacaatt-tgtacacttgcct 27921501  T
Q  214 aaatccgaccatcaagtt 231  Q
    ||||| ||||||||||||    
T  27921502 aaatctgaccatcaagtt 27921519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 29263483 - 29263553
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaacc 75  Q
    |||||||| | ||||||||| ||||||||||||||  |||||||| | |||||||||||||| |||||||||    
T  29263483 ctaacattatacaatcaaaagaggtaaactttgctttgttgcaaacatattaaattgcaaaa-ctctaaacc 29263553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 20744876 - 20744953
Alignment:
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgt 255  Q
    |||||||||||||||||| ||||  ||||| ||||  | |||||||||||||| |||| |||| |||||||||||||||    
T  20744876 actttattacttggtaaatgatttggtacacttgcc-atatccgaccatcaagcttttagcgcagttgtcggggattgt 20744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 26120934 - 26120881
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    ||||||||||| | |||||| |||| ||||||||||||||||||| ||||||||    
T  26120934 aacgacaatccttttgaatatgatactctacttaaactttattacatggtaaac 26120881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 19004258 - 19004325
Alignment:
Q  145 gacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgc 211  Q
    ||||||||||||| ||| |||| || |||||  ||||||||||||||||||||||| |||||| ||||    
T  19004258 gacaatccatgtggatacgatactccacttatcactttattacttggtaaacgatttagtacacttgc 19004325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 32581956 - 32581889
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacattt 209  Q
    ||||||||||| | ||||||||||| || ||||| ||||||||||||| ||||| ||| | |||||||    
T  32581956 aacgacaatccttatgaataagatactcaacttatactttattacttgctaaacaatttaatacattt 32581889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 24167613 - 24167671
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||||||||||  ||| |||| ||||||||  |||||||||||||||||||||||    
T  24167613 aacgacaatccatgtatatatgatactctacttactactttattacttggtaaacgatt 24167671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 32417357 - 32417471
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcat 213  Q
    |||||||||||   |||| ||||| || ||||  |||||||||  |||  ||| |||||||| ||||||||||||| |||||||||  ||||| || | |    
T  32417357 aaataagtaacagaaattgcctaggtgaaacgtaaatccatgtcgatataatactctacttacactttattacttgataaacgatttggtacacttacct 32417456  T
Q  214 aaatccgaccatcaa 228  Q
    |||| ||||||||||    
T  32417457 aaattcgaccatcaa 32417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 32448160 - 32448120
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgca 46  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  32448160 taacattctgcaatcaaaa-aggtaaactttgttccgttgca 32448120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 19900776 - 19900573
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattt 103  Q
    |||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||| ||||||||||         |||||||    
T  19900776 ctaacattatgcaatcaaaacaggtaaactttgctatgttgcaaacagattaaattgcaaaa-ctctaaaccc-ttatctttta---------tttattt 19900688  T
Q  104 agttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagt 203  Q
      ||||| | |||||||||| | ||||| |||||||||||||||||||  |||||||| |||| |||||||| ||||||||||||||||||| |||  ||    
T  19900687 tattgttatgaaataagtaatgtgaattgcctagttggaacgacaatctttgtgaatatgatactctacttacactttattacttggtaaacaatttggt 19900588  T
Q  204 acatttgcataaatc 218  Q
    ||| |||| ||||||    
T  19900587 acacttgcctaaatc 19900573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 15050076 - 15050204
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtac 205  Q
    |||||| |||||||||||||| ||||  |||||||||| |||||||||||||   | | ||||||||||| |||||||||||||||||| ||||   |||    
T  15050076 ttgttcccaaataagtaacgcaaattgtctagttggaatgacaatccatgtgttcacggtattctacttacactttattacttggtaaatgatttgatac 15050175  T
Q  206 atttgcataaatccgaccatcaagttttt 234  Q
    | |||| ||||||||||||||||||||||    
T  15050176 acttgcctaaatccgaccatcaagttttt 15050204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 15104348 - 15104220
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtac 205  Q
    |||||| |||||||||||||| ||||  |||||||||| |||||||||||||   | | ||||||||||| |||||||||||||||||| ||||   |||    
T  15104348 ttgttcccaaataagtaacgcaaattgtctagttggaatgacaatccatgtgttcacggtattctacttacactttattacttggtaaatgatttgatac 15104249  T
Q  206 atttgcataaatccgaccatcaagttttt 234  Q
    | |||| ||||||||||||||||||||||    
T  15104248 acttgcctaaatccgaccatcaagttttt 15104220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 20317743 - 20317893
Alignment:
Q  74 ccctttatcttttattttatt-gttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctac 172  Q
    ||||||||||||||||||||| ||||||||     ||||  |||||| ||| | |||||| |||||| |||||||||| |||||||||| |||| |||||    
T  20317743 ccctttatcttttattttatttgttttatt-----gttcctaaataaataatgtgaattttctagttagaacgacaattcatgtgaatacgatactctac 20317837  T
Q  173 ttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    ||| | |||||||| |||||||| ||| |||| | |||| ||||||||||||||||    
T  20317838 ttacattttattacatggtaaacaatttagtatacttgcttaaatccgaccatcaa 20317893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 22345123 - 22345009
Alignment:
Q  107 tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtaca 206  Q
    ||||| |||||||||||| |||||||||   |||||||||||||||||||| ||| |||| ||||| ||  |||||||||||| |||| ||||  || ||    
T  22345123 tgttcccaaataagtaacacgaatttcca--ttggaacgacaatccatgtggatacgatactctacatactctttattacttgataaatgattaggtgca 22345026  T
Q  207 tttgcataaatccgacc 223  Q
    ||||| |||||||||||    
T  22345025 tttgcctaaatccgacc 22345009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 17216887 - 17216773
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgcc 240  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||| ||||||||||||||  ||||||||||  | ||| ||||||||||||||| ||| |    
T  17216887 aacgacaatccatgtggatatgatactctacttatcactttattgcttggtaaacgatttggtacatttgc-catatctgaccatcaagtttttagcgtc 17216789  T
Q  241 gttgtcggggattgtt 256  Q
    |||| |||||| ||||    
T  17216788 gttgccggggaatgtt 17216773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 40215221 - 40215400
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattt 103  Q
    ||||||||||||||| |||||||||| || |||||| |||||||| |||| |||||||||||    | ||| |||||||||||||            |||    
T  40215221 ctaacattctgcaattaaaacaggtataccttgctctgttgcaaacagatcaaattgcaaaattctttaactctttatcttttat------------ttt 40215308  T
Q  104 agttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    |  ||||| ||||||||||| | ||||| ||||||||||||  | |||  |||| ||| |||| |||||||||||||||||| |||||||||    
T  40215309 aactgttcccaaataagtaatgtgaattgcctagttggaacatctatctttgtggatacgataatctacttaaactttattatttggtaaac 40215400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 13128941 - 13129016
Alignment:
Q  179 tttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgt 255  Q
    |||||||||||||||||||||  ||||| |||| ||| || || |||||||||||| ||||||||||||||||||||    
T  13128941 tttattacttggtaaacgatttggtacacttgcctaattc-gaacatcaagtttttagcgccgttgtcggggattgt 13129016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 20315200 - 20314998
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgtttt 99  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||| | |||||  |   ||| |||||||| ||| |||||||||| |||||         
T  20315200 ccactaacattctgcaatcaaaacaggtaa-ctttgcttcgttgtaaacatattaatgttacaaatctctaaactcttatatcttttatattatt----- 20315107  T
Q  100 atttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgat 198  Q
          ||||||||||||||||||||| ||||   | |  | ||||||||||| |||| ||| |||||||||||||  | ||||||||||||||||||||    
T  20315106 ------ttgttctcaaataagtaacgcaaattgtttggacgaaacgacaatccttgtggatatgatattctacttatcaatttattacttggtaaacgat 20315013  T
Q  199 tcagtacatttgcat 213  Q
    |  ||||| ||||||    
T  20315012 ttggtacacttgcat 20314998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 23080447 - 23080378
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta 175  Q
    ||||||||||||||||||||| ||||   | |||| ||||||||||||||||||||  ||||||||||||    
T  23080447 ttgttctcaaataagtaacgcaaattgtttggttgaaacgacaatccatgtgaatacaatattctactta 23080378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 21323904 - 21324007
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgcc 240  Q
    |||||||||| ||||| ||| |||| |||||| |  || |||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||| |||||    
T  21323904 aacgacaatctatgtggatacgatactctactgatcacattattatttggtaaacgatttagtacacttgcctaa-tccgaccatcaagtttttggcgcc 21324002  T
Q  241 gttgt 245  Q
     ||||    
T  21324003 attgt 21324007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 9737411 - 9737497
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattt 90  Q
    |||||||||||||||||||||  ||||| ||||||| | | |||| ||||||||||||||||  ||||||||||| | ||||||||||    
T  9737411 ctaacattctgcaatcaaaacgtgtaaaatttgctctggtacaaacagattaaattgcaaaa-atctaaacccttatctcttttattt 9737497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 25643620 - 25643468
Alignment:
Q  47 aatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacga 146  Q
    ||||||||||||||||||||| |     | |||||||||||||| ||| | || |||| |||||| |||||||||||||  |||| |||| ||| || ||    
T  25643620 aatagattaaattgcaaaaccgc-----cttttatcttttatttaatt-tattgttta-ttgttcccaaataagtaacgtaaattgcctaattgaaatga 25643528  T
Q  147 caatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtaca 206  Q
    ||| || |||| ||| |||| |||| ||| |||||||||||||  |||||||| ||||||    
T  25643527 caacccctgtggatacgatactctagttacactttattacttgacaaacgatttagtaca 25643468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 1833498 - 1833560
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    |||||||||||||||||||||||| ||||||||| |  || |||| |||||||||||| ||||    
T  1833498 ctaacattctgcaatcaaaacaggaaaactttgcgctattacaaacagattaaattgcgaaac 1833560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 13692698 - 13692756
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  13692698 aacgacaatccatgtggatatgatactctacttatcactttattacttggtaaacgatt 13692756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 13587265 - 13587208
Alignment:
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttt 234  Q
    ||||||||| |||||||||||||  ||||| ||||||||||| || ||||||||||||    
T  13587265 actttattatttggtaaacgatttggtacacttgcataaatctgatcatcaagttttt 13587208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 22218594 - 22218683
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    |||||| ||||||| ||| || ||||| ||||||||||| ||||||  | || ||| |||| |||||||| ||||||||||||| |||||    
T  22218594 ttgttcccaaataaataatgcaaattttctagttggaacaacaatctttatggatacgatactctacttacactttattacttgataaac 22218683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 11700475 - 11700534
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaa 64  Q
    |||||||||||||||||||| ||| |||| |||||| |||||||| | |||||||||||||    
T  11700475 ctaacattctgcaatcaaaataggcaaac-ttgctctgttgcaaacatattaaattgcaaa 11700534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 15164796 - 15164723
Alignment:
Q  182 attacttggtaaacgattcagtacatttg-cataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    ||||||||||||||||||  ||||| ||| ||||  |||||||||||||||||| |||| |||| |||||||||||    
T  15164796 attacttggtaaacgatttggtacacttgtcata--tccgaccatcaagtttttagcgctgttgccggggattgtt 15164723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 19492701 - 19492815
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaac-tttattacttggtaaacgattcagtacatttgca 212  Q
    ||||||||||||||||||   | | || ||||||||| | |||| ||| |||| ||||||||  | |||||||||||||||||||||  ||||| ||| |    
T  19492701 aaataagtaacgcgaattgtttggatgaaacgacaattcttgtggatacgatactctacttatccctttattacttggtaaacgatttggtacacttg-a 19492799  T
Q  213 taaatccgaccatcaa 228  Q
    || |||||||||||||    
T  19492800 tatatccgaccatcaa 19492815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 13908924 - 13908866
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||||||| |||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  13908924 aacgacaatccttgtggatacgatactctacttatcactttattacttggtaaacgatt 13908866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 25121226 - 25121312
Alignment:
Q  113 caaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||||||||||||||||   | |  | ||| ||||||| |||| ||| |||| | |||||| |||||||||||||||||||||||    
T  25121226 caaataagtaacgcgaattgtttggacgaaaccacaatccttgtggatacgatactatacttacactttattacttggtaaacgatt 25121312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 10107080 - 10106995
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    ||||||||||| | || |||  ||| |||||||  | |||||||||||||||||||||   |||| |||| |||||||||||||||    
T  10107080 aacgacaatccctatggatagaatactctacttgcaatttattacttggtaaacgatttgctacacttgcctaaatccgaccatca 10106995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 15104439 - 15104351
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctcc-gttgcaaatagattaaattgcaaaacctctaaaccctttatcttttatttt 91  Q
    ||||||||||  |||||||||| |||||  ||||||| | |||||| | || ||||||||||||| ||  ||| |||||||||||||||    
T  15104439 ctaacattctataatcaaaacatgtaaatcttgctcctgctgcaaacaaatcaaattgcaaaacccctttaccttttatcttttatttt 15104351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 22526562 - 22526530
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttg 36  Q
    |||||||| ||||||||||||||||||||||||    
T  22526562 ctaacattatgcaatcaaaacaggtaaactttg 22526530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 492 - 659
Target Start/End: Original strand, 3537558 - 3537723
Alignment:
Q  492 agggatcccagattcgagcaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaat 591  Q
    ||||||||||| | ||||  || || ||||||| ||||||||| ||||||||||| ||||| |||||||||  ||||| |||||||||||| ||||| ||    
T  3537558 agggatcccaggtacgagtgacgctgtcctgcaaagttcctatatccatcggcaaacattataaagaagag--gtactttgtgatgttcttgatatggat 3537655  T
Q  592 gtttttcatattttacttgatagaccttgacaatttgataatgatattacttattggggacgagataa 659  Q
    |||| |||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||| |||||    
T  3537656 gtttgtcatattttacttggtagaccttggcagtttgataatgatattacttatcggggacgggataa 3537723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 20722192 - 20722292
Alignment:
Q  128 aatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||| ||||||||||| |||||||| |||| |||  ||| ||||||||| ||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  20722192 aattgcctagttggaaagacaatccttgtggatattatactctacttaa-ctttattacttggtaaacgatttggtacatttgcctaaatccgaccatca 20722290  T
Q  228 ag 229  Q
    ||    
T  20722291 ag 20722292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 74 - 256
Target Start/End: Complemental strand, 34478664 - 34478480
Alignment:
Q  74 ccctttatcttttattttattgt--tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattcta 171  Q
    ||||||||||||||||||||| |  |||||||  |||||  |||| |||||||  ||||| |||||||| || | |||||| |||| ||| |||| ||||    
T  34478664 ccctttatcttttattttattttattttattttattgtttccaaaaaagtaacatgaattgcctagttgaaatgtcaatccttgtggatacgatactcta 34478565  T
Q  172 cttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    |||| ||||||||| |||||||||||||  ||| | ||||  |||||| |||||||| |||||  |||||||| ||| |||||||    
T  34478564 cttacactttattatttggtaaacgatttggtagaattgcccaaatccaaccatcaaatttttgacgccgttgacggagattgtt 34478480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9726223 - 9726006
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaatt-gcaaaacctctaaaccctt-tatcttttattttattgttt 98  Q
    ||||||||||||||||||||||||||||||||||| |||  || |||| | ||||| || ||||||| | ||||||||| | ||||||||||||||        
T  9726223 ccactaacattctgcaatcaaaacaggtaaacttttctcttttccaaacatattaactttgcaaaactt-taaacccttatctcttttattttatt---- 9726129  T
Q  99 tatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacga 197  Q
           |||||| |||||||||||||| ||||   | |  | |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||||||    
T  9726128 -------ttgttcccaaataagtaacgcaaattgtttggacgaaacgacaatccatgtggatacgatactctacttatcactttattacttggtaaacga 9726036  T
Q  198 ttcagtacatttgcataaatccgaccatcaa 228  Q
    ||  ||||| |||| | ||||||||||||||    
T  9726035 tttggtacacttgcct-aatccgaccatcaa 9726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 28589326 - 28589412
Alignment:
Q  2 cactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattt 90  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||| | |||| ||||||||| |||||||||| |||||||||||||    
T  28589326 cactaacattctgcaatcaaaacatgtaaactttactctgttgcaaacatattatattgcaaaa-ctctaaaccc-ttatcttttattt 28589412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 24188133 - 24188210
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatc 82  Q
    |||||||| | |||||||||||| |||||||||||| |||||||| |||||||||||||||| || |||||||||||||    
T  24188133 ctaacatttttcaatcaaaacagataaactttgctctgttgcaaacagattaaattgcaaaa-ctataaaccctttatc 24188210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 15614171 - 15614298
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaat------ccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||| ||||||||||||| ||||| |||||||||||| |||||      ||||||| |||  ||| |||||||| ||||||||||| | |||||||||    
T  15614171 ttgttcccaaataagtaacgtgaattgcctagttggaacaacaatcccaatccatgtggatattataatctacttatactttattactggataaacgatt 15614270  T
Q  200 cagtacatttgcataaatccgaccatca 227  Q
     |||||||||   |||||||||||||||    
T  15614271 tagtacatttttctaaatccgaccatca 15614298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 28585932 - 28586174
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattt 103  Q
    |||||||||| |||||||||||| |||||||| ||| |||| ||| | ||||||||||||||  ||||||||||| |||||| ||||     ||||||      
T  28585932 ctaacattctacaatcaaaacagataaacttttctctgttgtaaacatattaaattgcaaaaa-tctaaaccctt-atctttaattta----ttttat-- 28586023  T
Q  104 agttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcag 202  Q
    ||||  || ||||||||||||| | |||   | |||| |||||||||||||||  ||| |||| ||||||||  | ||||||||| |||||||||||  |    
T  28586024 agtt--tc-caaataagtaacgtggattgttttgttgaaacgacaatccatgtcgatatgatactctacttatcaatttattactcggtaaacgatttgg 28586120  T
Q  203 tacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    || | |||  |||||||||||||||||||||| ||  |||||||| ||| ||||    
T  28586121 tatacttgtctaaatccgaccatcaagtttttggcatcgttgtcgtggagtgtt 28586174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 9386186 - 9386070
Alignment:
Q  74 ccctttatcttttattttattgtttt-----atttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatatt 168  Q
    ||||||||||||||||||||||||||     ||||  ||||||  |||||||||||  |||||||||||||| | ||| |||| ||||| ||| |||| |    
T  9386186 ccctttatcttttattttattgtttttatttattttcttgttcctaaataagtaacttgaatttcctagttgaatcgataatctatgtggatacgatact 9386087  T
Q  169 ctacttaaactttatta 185  Q
    ||||||| |||||||||    
T  9386086 ctacttacactttatta 9386070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 8241311 - 8241233
Alignment:
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    ||||| |||||| ||||||||||  ||||| |||| ||| |||||| ||||||||||||||| |||||||||||||||||    
T  8241311 actttcttacttcgtaaacgatttggtacacttgcctaa-tccgactatcaagttttttgcgtcgttgtcggggattgtt 8241233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 31629127 - 31629229
Alignment:
Q  127 gaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagtacatttgcataaatccgaccat 225  Q
    ||||| |||||||||||||||||||||||||||||   |||||||| ||  | |||||||||||||||||||||   |||| |||  ||||| |||||||    
T  31629127 gaattgcctagttggaacgacaatccatgtgaatacattattctacctatcattttattacttggtaaacgatttcatacaattgtctaaattcgaccat 31629226  T
Q  226 caa 228  Q
    |||    
T  31629227 caa 31629229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 23088236 - 23088297
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaa 65  Q
    |||||||||| |||||||||||||||||||||||||  ||||||| | ||||||||| ||||    
T  23088236 ctaacattctacaatcaaaacaggtaaactttgctctattgcaaacaaattaaattgaaaaa 23088297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 7542857 - 7542978
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgttttatt 102  Q
    |||||||||||||||||||||| ||||| ||| |||  |||| || | ||||||||||||||| || |||||||| | ||||||||||||||   |||||    
T  7542857 ctaacattctgcaatcaaaacatgtaaaatttactctattgcgaaaaaattaaattgcaaaac-tcgaaacccttatctcttttattttatt---ttatt 7542952  T
Q  103 tagttgttctcaaataagtaacgcgaatt 131  Q
    |   |||| || |||||||||||||||||    
T  7542953 t---tgttttcgaataagtaacgcgaatt 7542978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 9386069 - 9385973
Alignment:
Q  97 tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaa 193  Q
    |||||||  ||||||  |||||||||| | ||||| |||||||| |||||||||||||||| ||| |  | |||||||  |||||||||||||||||    
T  9386069 tttattttcttgttcctaaataagtaatgtgaattgcctagttgaaacgacaatccatgtggatacgcgactctacttgcactttattacttggtaa 9385973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 26215388 - 26215501
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcat 213  Q
    |||||||||||| ||||| |||| ||| |||||||||| || || ||| |||| |||||||| ||||||||| |||| ||| ||||  ||||  |||| |    
T  26215388 aaataagtaacgtgaattgcctaattgaaacgacaatctatatggatacgatactctacttacactttattatttgg-aaatgatttggtactattgcct 26215486  T
Q  214 aaatccgaccatcaa 228  Q
    ||||||||| |||||    
T  26215487 aaatccgactatcaa 26215501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 17729349 - 17729288
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    ||||||||| ||||||||||  |||||| ||| || |||||||||||||||||||| |||||    
T  17729349 taacattctacaatcaaaactagtaaacattgttctgttgcaaatagattaaattgtaaaac 17729288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 25927338 - 25927417
Alignment:
Q  148 aatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||||||||| ||| |||||||||||||  |||||||||||||||||||| ||  ||||| |||| | |||||||||||||    
T  25927338 aatccatgtggatacgatattctacttatcactttattacttggtaaacgttttggtacacttgcct-aatccgaccatca 25927417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 12183363 - 12183434
Alignment:
Q  145 gacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataa 215  Q
    ||||||||||||| ||| |||| | ||||||  |||||||||||||||||||||||  ||||| ||||||||    
T  12183363 gacaatccatgtggatacgatactgtacttatcactttattacttggtaaacgatttggtacacttgcataa 12183434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 9516855 - 9516797
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgatt 199  Q
    |||||||||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||    
T  9516855 aacgacaatccatgtggatacgatactctacttatcactttattactaggtaaacgatt 9516797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 15466418 - 15466345
Alignment:
Q  163 gatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgc 237  Q
    |||| ||||| || |||||||||||||||||||||||  ||||| |||| | |||||| ||||||| ||||||||    
T  15466418 gatactctacgtacactttattacttggtaaacgatttggtacacttgcct-aatccggccatcaatttttttgc 15466345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 5624693 - 5624640
Alignment:
Q  159 ataagatattctacttaa-actttattacttggtaaacgattcagtacatttgc 211  Q
    |||||||| ||||||||  |||||||||||||||||||||||  ||||||||||    
T  5624693 ataagatactctacttatcactttattacttggtaaacgatttggtacatttgc 5624640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 21672470 - 21672522
Alignment:
Q  148 aatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  21672470 aatccatgtggatacgatactctacttatcactttattacttggtaaacgatt 21672522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 20174781 - 20174527
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtttta 100  Q
    ||||||||||||| |||||||||||||||||  ||| || |||||| | |||| ||||||||||| | ||  ||||||||||||| ||||  || |||      
T  20174781 ccactaacattctacaatcaaaacaggtaaatcttggtctgttgcatacagatcaaattgcaaaaaccctttaccctttatcttt-atttgtttatttat 20174683  T
Q  101 tttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattc 200  Q
    ||||  ||||| |||||||||||||||| |||||| ||| |||||| ||||||||| |||  |||| |||| ||| |||||||||| | ||||||||||     
T  20174682 tttaaatgttcccaaataagtaacgcgagtttcctcgttagaacgaaaatccatgttaatgcgatactctagttacactttattacctagtaaacgattt 20174583  T
Q  201 agtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
     ||| | |||  ||||||| | | |||||||||| || || |||||||||||||||    
T  20174582 ggtatacttgtctaaatccaaacgtcaagtttttggctccattgtcggggattgtt 20174527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 2563887 - 2563777
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccg 241  Q
    ||||||||||| |||| ||| |||| |||||||| |||||||||||||||||||||||  ||||| |||||| ||||||  |||||||||||| ||||||    
T  2563887 aacgacaatccttgtggatacgatactctacttacactttattacttggtaaacgatttggtacacttgcat-aatccgcacatcaagtttttggcgccg 2563789  T
Q  242 ttgtcggggatt 253  Q
    ||||||||||||    
T  2563788 ttgtcggggatt 2563777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 23093481 - 23093294
Alignment:
Q  45 caaatagattaaattgcaaaacctctaaaccctttatcttttatttta-ttgttttatttagtt----gttctcaaataagtaacgcgaatttcctagtt 139  Q
    |||| |||||||||||||||||  ||| ||| |||||||||||||||| |||||||||||| ||    |||| |||||||||||   ||||| |||||||    
T  23093481 caaacagattaaattgcaaaactcctataccttttatcttttattttaattgttttatttattttcttgttcccaaataagtaaattgaattgcctagtt 23093382  T
Q  140 ggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    | |||||||||||| ||  |||  ||| |||||||| |||||||||||| ||||||||||  ||||| |||| |||||  ||||||||    
T  23093381 gaaacgacaatccacgtagatacaatactctacttacactttattacttagtaaacgatttggtacacttgcctaaatatgaccatca 23093294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 5797708 - 5797618
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttatt 94  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||  ||||||||||| | ||||||||||||||    
T  5797708 ctaacattctgcaatcaaaacaggtaaactttgctctgttgcaaatagattaacttg-aaaaaatctaaacccttatctcttttattttatt 5797618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 15303596 - 15303707
Alignment:
Q  88 ttttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattact 187  Q
    |||||||  |||||||  |||||||||||||||||||| |||||||||||||||||||||||| | |||  ||| |||| | |||||| ||||||||||     
T  15303596 ttttatttctttattttattgttctcaaataagtaacgtgaatttcctagttggaacgacaattcgtgtagatacgatactttacttacactttattacc 15303695  T
Q  188 tggtaaacgatt 199  Q
    ||||||||||||    
T  15303696 tggtaaacgatt 15303707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 2453837 - 2453717
Alignment:
Q  107 tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtaca 206  Q
    ||||| |||||||||||| ||||||  ||||||||||| | |||| ||||||||| |||| |||||||||| ||||||||||| ||||| ||| | ||||    
T  2453837 tgttcccaaataagtaacacgaattgtctagttggaacaataatctatgtgaatacgatactctacttaaattttattacttgataaacaatttaataca 2453738  T
Q  207 tttgcataaatccgaccatca 227  Q
     |||| ||||||| |||||||    
T  2453737 cttgcctaaatccaaccatca 2453717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 10937798 - 10937585
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattta 104  Q
    ||||||||| |||||||||||| |||||||||||| | |||||| | |||||||| |||||| ||||||||||| ||||||   |||||| ||           
T  10937798 taacattctccaatcaaaacagataaactttgctctgctgcaaacaaattaaattacaaaac-tctaaaccctt-atcttta--tttattttt------- 10937710  T
Q  105 gttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagt 203  Q
    ||||||||||||||||||| | |||||   |  ||| |||||||||||||||| ||| |||| | ||||||  |||||||||||||||||||||||   |    
T  10937709 gttgttctcaaataagtaatgtgaattgtttgattgaaacgacaatccatgtggatacgatactatacttatcactttattacttggtaaacgatttgat 10937610  T
Q  204 acatttgcataaatccgaccatcaa 228  Q
    ||| |||| ||||||| ||||||||    
T  10937609 acacttgcctaaatccaaccatcaa 10937585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 33035608 - 33035456
Alignment:
Q  77 tttatcttttattttattgtttt-atttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta 175  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||| | ||||| ||||||||| ||||||| ||| ||  ||  |||| ||||| ||    
T  33035608 tttatcttttattttattgtttttattttcttgttctcaaataagtaatgtgaattgcctagttggtacgacaagccacgtagatgcgatactctaccta 33035509  T
Q  176 -aactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
      |||||||||| ||||||||||||   |||| |||| ||||||||||||||||    
T  33035508 tcactttattac-tggtaaacgatttgatacacttgcctaaatccgaccatcaa 33035456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 5047437 - 5047517
Alignment:
Q  163 gatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgtt 243  Q
    |||| |||||||| |||||||||||||||||| ||||  ||||| |||| |||||||||||||||||||||| ||||||||    
T  5047437 gataatctacttacactttattacttggtaaatgatttggtacacttgcctaaatccgaccatcaagtttttggcgccgtt 5047517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 21912381 - 21912472
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaa-attgcaaaacctctaaaccctt-tatcttttattttatt 94  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||| |||||||||||| | || |||||||||||    
T  21912381 ctaacattctgcaatcaaaacatgtaaactttgctctgttgcaaatagattaactttgcaaaa-ctctaaacccttatctcatttattttatt 21912472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 9864233 - 9864438
Alignment:
Q  9 attctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttatttagttg 108  Q
    |||||||||||||||||||| |||||||||  |||||||| ||| |||||||||||| |||||||||| ||||||     ||||    | |||||  |||    
T  9864233 attctgcaatcaaaacaggt-aactttgctttgttgcaaacagagtaaattgcaaaa-ctctaaaccc-ttatct----cttta----tatattttattg 9864321  T
Q  109 ttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagtacat 207  Q
    |||||||||||||||||| ||||   |||  | ||||||||||| |||| ||| |||| ||||||||  ||||||||||||||||||| |||  |||||     
T  9864322 ttctcaaataagtaacgcaaattgtttagacgaaacgacaatccttgtggatatgatactctacttatcactttattacttggtaaacaatttggtacac 9864421  T
Q  208 ttgcataaatccgaccat 225  Q
    |||| | |||||||||||    
T  9864422 ttgcct-aatccgaccat 9864438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18449728 - 18449671
Alignment:
Q  9 attctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||| |||||    
T  18449728 attctgcaatcaaaacaggtaaacattgatctgttgcaaatagattaaattgaaaaac 18449671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 18466201 - 18466129
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    ||||||| |||||| |||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||    
T  18466201 taacattttgcaattaaaataggtaaactttgatctgttgcaaataaattaaattgcaaaa-ctctaaaccctt 18466129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 9866541 - 9866657
Alignment:
Q  113 caaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgca 212  Q
    ||||||||||||| |||||  |||||| ||||||||||   |||| ||| |||| |||||||| ||||||||| ||||||||| |||  ||||| ||||     
T  9866541 caaataagtaacgtgaattgtctagttagaacgacaattattgtggatatgatactctacttacactttattatttggtaaacaatttggtacacttgcg 9866640  T
Q  213 taaatccgaccatcaag 229  Q
    ||||||  |||||||||    
T  9866641 taaatctcaccatcaag 9866657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 21227277 - 21227161
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagtaca-tttgc 211  Q
    |||||||||||||||||| ||||||| |||||| ||| |||||  ||| |||| ||||||||  |||||||||||| ||||| ||||  ||||| |||||    
T  21227277 aaataagtaacgcgaattgcctagttagaacgagaattcatgtagatacgatactctacttatcactttattactttgtaaatgatttggtacattttgc 21227178  T
Q  212 ataaatccgaccatcaa 228  Q
     ||||||| ||||||||    
T  21227177 ctaaatccaaccatcaa 21227161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 26134750 - 26134862
Alignment:
Q  115 aataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcata 214  Q
    ||||||||||| |||||  ||||||| || |||| || ||||| ||| |||| |||||||| | |||||||||||||||||||||  ||||| |||  ||    
T  26134750 aataagtaacgtgaattgtctagttgaaatgacagtctatgtggatacgatactctacttacattttattacttggtaaacgatttggtacacttgtcta 26134849  T
Q  215 aatccgaccatca 227  Q
    ||||| |||||||    
T  26134850 aatccaaccatca 26134862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 9890260 - 9890167
Alignment:
Q  135 tagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    ||||||||||||| |||| ||   ||| |||| ||||||||  ||||||||||| ||||||||||| |||||| |||| |||||||||||||||    
T  9890260 tagttggaacgactatccttgcagatacgatactctacttactactttattactcggtaaacgatttagtacacttgcttaaatccgaccatca 9890167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 9916641 - 9916544
Alignment:
Q  137 gttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagtttt 233  Q
    |||| ||| |||||||||||| ||| |||| ||||||||  |||||||||| ||||||| ||||  ||| | |||| |||||||||||||||||||||    
T  9916641 gttgaaactacaatccatgtggatacgatactctacttattactttattacgtggtaaatgatttggtatacttgcctaaatccgaccatcaagtttt 9916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 9924553 - 9924456
Alignment:
Q  137 gttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagtttt 233  Q
    |||| ||| |||||||||||| ||| |||| ||||||||  |||||||||| ||||||| ||||  ||| | |||| |||||||||||||||||||||    
T  9924553 gttgaaactacaatccatgtggatacgatactctacttattactttattacgtggtaaatgatttggtatacttgcctaaatccgaccatcaagtttt 9924456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36117446 - 36117511
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    ||||||||||||||||| ||||| | |||||||||| || |||||||| | |||||||||||||||    
T  36117446 ccactaacattctgcaaacaaaataagtaaactttgttctgttgcaaacaaattaaattgcaaaac 36117511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 1587715 - 1587637
Alignment:
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    |||||| ||||| ||||||||||  |||||||||| ||| |||||||||||||||||| | ||||||| ||| |||||||    
T  1587715 actttactacttagtaaacgatttggtacatttgcctaa-tccgaccatcaagtttttggtgccgttgccggagattgtt 1587637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 16365775 - 16365673
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgcc 240  Q
    |||||||||||||||| ||| |||| |||||||   |||||||||||||||||||||||  ||||| ||   | |||||||| ||||||||||| |||||    
T  16365775 aacgacaatccatgtggatacgatactctactttttactttattacttggtaaacgatttggtacacttttct-aatccgactatcaagtttttagcgcc 16365677  T
Q  241 gttg 244  Q
    ||||    
T  16365676 gttg 16365673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 7318343 - 7318258
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||||||||||||||| ||| |||| ||||||||  ||||||||||||||||||||||   ||||| |||| | |||||||||||||    
T  7318343 aacgacaatccatgtggatacgatactctacttatcactttattacttggtaaacgatatggtacacttgcct-aatccgaccatca 7318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 7397265 - 7397211
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacg 196  Q
    |||||||||||||||| ||| |||| |||| ||| ||||||||||||||||||||    
T  7397265 aacgacaatccatgtggatacgatactctagttacactttattacttggtaaacg 7397211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 17203093 - 17203008
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    |||||||||||  ||||||| |||| |||||||| ||||||||||||  ||||| ||| | ||||||||| | ||||||||||||||    
T  17203093 aacgacaatccccgtgaatacgatactctacttatactttattacttcataaacaatttaatacatttgcct-aatccgaccatcaa 17203008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 9500639 - 9500569
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    ||||||| |||||||||| || |||| |||||||| |||||||||||||||||||| |||| ||||||||||||    
T  9500639 taacattttgcaatcaaa-catgtaa-ctttgctctgttgcaaatagattaaattg-aaaaactctaaaccctt 9500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 9720998 - 9720941
Alignment:
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttt 234  Q
    ||||||||| |||||||||||||  ||||| ||||||||||| || ||||||||||||    
T  9720998 actttattatttggtaaacgatttggtacacttgcataaatctgatcatcaagttttt 9720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 2504274 - 2504186
Alignment:
Q  107 tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    ||||| |||| |||||||| || ||||||  ||||||| |||||||||||  ||| |||| | ||| || |||||||||||||||||||    
T  2504274 tgttcccaaaaaagtaacgtgagtttcctcattggaacaacaatccatgtagatacgataatatacctacactttattacttggtaaac 2504186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 5108635 - 5108583
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||||||||| |||| ||| |||| |||||||| ||||||||||||||||||    
T  5108635 aacgacaatccttgtggatacgatactctacttacactttattacttggtaaa 5108583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 18449357 - 18449226
Alignment:
Q  97 tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaac 195  Q
    |||||||  |||||| |||||||||||||| ||||   | | || ||||||||||| | || ||| |||||| |||||   |||||||||||||||||||    
T  18449357 tttattttattgttcccaaataagtaacgccaattgtttggctgaaacgacaatccctatggatacgatattatacttctcactttattacttggtaaac 18449258  T
Q  196 gattcagtacatttgcataaatccgaccatca 227  Q
     |||   |||| |||| |||||||||||||||    
T  18449257 aatttgatacacttgcctaaatccgaccatca 18449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 21885057 - 21885148
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttatt 94  Q
    ||||||| ||||||||| ||| ||| |||||||||| |||||||| || | || ||  |||| |||||||||||| | ||||||||||||||    
T  21885057 ctaacatgctgcaatcagaactggtcaactttgctctgttgcaaacaggtcaactttgaaaaactctaaacccttatctcttttattttatt 21885148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 2953679 - 2953585
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatcca-tgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    ||||||| |||||||||||||| ||   |||||||||||||||||  | | || ||| |||| |||||||| ||||||||| ||| |||||||||    
T  2953679 ttgttcttaaataagtaacgcggatactctagttggaacgacaatatactttggatacgatactctacttacactttattatttgataaacgatt 2953585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 10648684 - 10648590
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||| ||||||||||| ||||||   ||| || ||||||||||| || | ||| |||| |||| |||  |||||||||||||||||||||||    
T  10648684 ttgttctaaaataagtaacacgaattgtttagatgaaacgacaatccgtgcgcatatgatactctatttatcactttattacttggtaaacgatt 10648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 16306874 - 16306821
Alignment:
Q  22 aacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccc 76  Q
    |||||||||||||||||| |||| ||||| |||||||| ||||| ||||||||||    
T  16306874 aacaggtaaactttgctctgttgtaaatatattaaatttcaaaa-ctctaaaccc 16306821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 31493000 - 31492942
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgatt 199  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||| ||||||||||||    
T  31493000 aacgacaatccatgtggatacgatactctacttatcactttattacctggtaaacgatt 31492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 3329687 - 3329740
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaa 194  Q
    |||||||||||||||| ||| |||| ||||||||  ||||||||||||||||||    
T  3329687 aacgacaatccatgtggatacgatactctacttatcactttattacttggtaaa 3329740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 9078265 - 9078189
Alignment:
Q  113 caaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttg 189  Q
    |||||||||||||| |||| | ||||| |||||| ||||| |||| ||| |||| |||||||| | | |||||||||    
T  9078265 caaataagtaacgcaaattgcttagtttgaacgataatccctgtggatacgataatctacttacattctattacttg 9078189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 14755036 - 14755096
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaa 65  Q
    ||||||||||||||||||| ||| |||||||||||   |||||| | |||||||| |||||    
T  14755036 taacattctgcaatcaaaatagggaaactttgctctactgcaaacaaattaaatttcaaaa 14755096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 492 - 645
Target Start/End: Complemental strand, 22925202 - 22925051
Alignment:
Q  492 agggatcccagattcgagcaacactatcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaat 591  Q
    ||||||||||| | ||||  || | |||||||| ||||||||| ||||||||||| ||||| | |||||||  ||||| |||||||||||| ||||| ||    
T  22925202 agggatcccaggtacgagtgacgcaatcctgcaaagttcctatatccatcggcaaacattatagagaagag--gtactttgtgatgttcttgatatggat 22925105  T
Q  592 gtttttcatattttacttgatagaccttgacaatttgataatgatattacttat 645  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||||||||    
T  22925104 gtttgtcatattttacttggtagaccttggcagtttgataatgatattacttat 22925051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 26008156 - 26008007
Alignment:
Q  78 ttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-a 176  Q
    ||||||||||||||||| | ||||||| || |||||||||||||||||||||||| |||||||||| |||||||| | |  |||  ||| ||||||||      
T  26008156 ttatcttttattttattttattattta-ttattctcaaataagtaacgcgaattttctagttggaatgacaatccctcttgataccatactctacttatc 26008058  T
Q  177 actttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||||||||||||||||| ||||  ||||| |||| ||||| |||||||||    
T  26008057 actttattacttggtaaatgatttggtacacttgcctaaattcgaccatca 26008007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 15292846 - 15292748
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||||||  |||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||  || | |||||||| ||||||||||||||||||    
T  15292846 ttttattttcttgttcccaaataagtaacgtgaattgcctaattggaacgacaatccatgtgaatccgaaactctacttacactttattacttggtaaa 15292748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 15473215 - 15473117
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||||||  |||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||  || | |||||||| ||||||||||||||||||    
T  15473215 ttttattttcttgttcccaaataagtaacgtgaattgcctaattggaacgacaatccatgtgaatccgaaactctacttacactttattacttggtaaa 15473117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 24119657 - 24119884
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtttta 100  Q
    |||||| ||||||||||||||||||||||||  ||| |  | ||| || | ||||| ||||||||||  |  |||||||| |||||||  |  | |||      
T  24119657 ccactatcattctgcaatcaaaacaggtaaatcttgttttgatgctaacaaattaatttgcaaaacccatttaccctttaccttttatcattgtatttat 24119756  T
Q  101 tttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattc 200  Q
    |||| |||| | ||||||||||  | ||||||| |||||||||||| |||||||||| |||  ||| |||||||| ||||||| |||||||||||||||     
T  24119757 tttaattgtacccaaataagtagtgtgaatttcttagttggaacgaaaatccatgtggatacaatactctacttacactttataacttggtaaacgattt 24119856  T
Q  201 agtacatttgcataaatccgaccatcaa 228  Q
     | ||| |||  ||||| ||||||||||    
T  24119857 ggcacacttgtctaaattcgaccatcaa 24119884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 28317555 - 28317431
Alignment:
Q  76 ctttatcttttattttattgttttatttagt------tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattc 169  Q
    ||||||||||||||||||||||||||||| |      |||||| |||| ||||||| ||||| |||||||| ||| ||||| |||||  ||| |||| ||    
T  28317555 ctttatcttttattttattgttttatttattgttttctgttcttaaatgagtaacgtgaattgcctagttgaaacaacaatacatgttgatatgatactc 28317456  T
Q  170 tacttaaactttattacttggtaaa 194  Q
    |||||| ||||||||||||||||||    
T  28317455 tacttacactttattacttggtaaa 28317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 5851132 - 5850925
Alignment:
Q  9 attctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgttttatttagtt 107  Q
    |||||||||| |||||||||||| |||||||||||||||| | |||||||||||||| |||| |||| || | ||||||| ||||||           ||    
T  5851132 attctgcaattaaaacaggtaaattttgctccgttgcaaacatattaaattgcaaaa-ctcttaaccattatctctttta-tttatt-----------tt 5851046  T
Q  108 gttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagtaca 206  Q
    ||||||||||||||||| || |||   | |||| |||||||||| ||||| ||| |||| ||||||||  |||||||||||||||||||||||  |||||    
T  5851045 gttctcaaataagtaacacggattgtttggttgaaacgacaatctatgtggatacgatactctacttatcactttattacttggtaaacgattaggtaca 5850946  T
Q  207 tttgcataaatccgaccatcaa 228  Q
     ||| |  ||||||||||||||    
T  5850945 cttg-actaatccgaccatcaa 5850925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 14006226 - 14006112
Alignment:
Q  75 cctttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactt 174  Q
    ||||||||||||||||||||||||      || |||  ||||||||||| || |||| |||||||||||| ||||| |||||||||| |||| |||||||    
T  14006226 cctttatcttttattttattgttt------gtagtttccaaataagtaatgcaaattgcctagttggaacaacaattcatgtgaatatgatactctactt 14006133  T
Q  175 a-aactttattacttggtaaa 194  Q
    |  | ||||||||||||||||    
T  14006132 atcattttattacttggtaaa 14006112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 17965241 - 17965189
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaa 56  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  17965241 ctaacattctgcaatcaaaacagataaactttgctctattgcaaatagattaa 17965189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 24110722 - 24110798
Alignment:
Q  179 tttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    |||||||||||||||| ||||   |||| |||||||| ||||  |||||||||||| |||||||||||||||||||||    
T  24110722 tttattacttggtaaatgatttgatacacttgcataa-tccgcacatcaagtttttggcgccgttgtcggggattgtt 24110798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 44011053 - 44011110
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||||||||||||| ||| |||| |||||||| |||||||||||| ||||||||||    
T  44011053 aacgacaatccatgtggatacgatactctacttacactttattacttcgtaaacgatt 44011110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 14075791 - 14075578
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattta 104  Q
    ||||||||||||||||||||||| ||||||||| | |||||||| | ||||| ||   ||| |||||||||| |||||| |||         |||||||     
T  14075791 taacattctgcaatcaaaacagggaaactttgcactgttgcaaacatattaactttacaaaactctaaaccc-ttatctctta---------tttatttt 14075702  T
Q  105 gttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagt 203  Q
     || |||  |||||||||||||  |||   | |||| |||||||||||||||| ||| |||| ||||||||  ||||| |||||||||||| ||||  ||    
T  14075701 attattcctaaataagtaacgcacattgtttggttgaaacgacaatccatgtggatacgatagtctacttatcactttcttacttggtaaaagatttggt 14075602  T
Q  204 acatttgcataaatccgaccatca 227  Q
    ||| || | ||||||| |||||||    
T  14075601 acaatttcctaaatccaaccatca 14075578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 17972264 - 17972193
Alignment:
Q  118 aagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttg 189  Q
    |||||||| ||||| ||||||| ||| ||||||||||| | ||| |||| |||||||| |||||||||||||    
T  17972264 aagtaacgtgaattgcctagttagaatgacaatccatgcggatacgatactctacttacactttattacttg 17972193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 31288473 - 31288342
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    ||||||||  ||||| || ||||| ||||||||||    | |||| || |||||||| | || ||| |||| | |||||| |||||||||||||||||||    
T  31288473 ttttattttattgttttcgaataattaacgcgaatgatttggttgaaaagacaatccctatggatacgatactttacttacactttattacttggtaaac 31288374  T
Q  196 gattcagtacatttgcataaatccgaccatca 227  Q
    ||||  ||||| || | |||||||||||||||    
T  31288373 gatttggtacactttcctaaatccgaccatca 31288342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 5052828 - 5052886
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaa 64  Q
    ||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||||||    
T  5052828 ctaacattctgcaatcaaa-caagtaaactt-gctctgttgcaaacagattaaattgcaaa 5052886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 15238993 - 15238935
Alignment:
Q  6 aacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    ||||||||||||||||| ||||||| |||||||  |||||||| |||||||||||||||||    
T  15238993 aacattctgcaatcaaa-caggtaa-ctttgctatgttgcaaacagattaaattgcaaaac 15238935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 24269667 - 24269615
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||||||||| |||| ||| |||| |||||||| ||||||||||||||||||    
T  24269667 aacgacaatccctgtggatacgatactctacttacactttattacttggtaaa 24269615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 29382390 - 29382448
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||||||| |||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  29382390 aacgacaatccctgtggatacgatactctacttatcactttattacttggtaaacgatt 29382448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 30122187 - 30122232
Alignment:
Q  145 gacaatccatgtgaataagatattctacttaaactttattacttgg 190  Q
    ||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  30122187 gacaatccatgtggatatgatactctacttacactttattacttgg 30122232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 24644907 - 24644855
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||| |||||||||| |||  ||| |||||||| ||||||||||||||||||    
T  24644907 aacgataatccatgtggatacaatactctacttacactttattacttggtaaa 24644855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 30783772 - 30783828
Alignment:
Q  144 cgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||| ||||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  30783772 cgacaatctatgtggatacgatactctacttatcactttattacttggtaaacgatt 30783828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 8447051 - 8447165
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcat 213  Q
    ||||||||||||||| ||  |||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||  ||||| |||| |    
T  8447051 aaataagtaacgcgagttgtctagttggaacgacaatccatgtggatacgataatctacttatactttattacttggtaaacgatttggtacacttgcct 8447150  T
Q  214 aaatccgaccatcaa 228  Q
    |||| ||||||||||    
T  8447151 aaattcgaccatcaa 8447165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 12557702 - 12557823
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtac 205  Q
    |||||| ||| |||||||| | |||| |||| ||| |||| |||||| |||| ||  ||||||||||||| |||||||||||||||||| ||||  ||||    
T  12557702 ttgttcccaagtaagtaacacaaattgcctaattgaaacggcaatccttgtggattcgatattctacttacactttattacttggtaaaagatttggtac 12557801  T
Q  206 atttgcataaatccgaccatca 227  Q
    | |||| |||||||||||||||    
T  12557802 acttgcctaaatccgaccatca 12557823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 32439981 - 32440118
Alignment:
Q  97 tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacg 196  Q
    |||||||  ||||||||||||||||||| | |||| |||| ||| ||||| |||||  ||| ||| |||| | || ||| |||||||| ||||||||||     
T  32439981 tttattttcttgttctcaaataagtaacacaaattgcctaattgaaacgataatcctcgtggatacgatactttatttacactttatttcttggtaaaca 32440080  T
Q  197 attcagtacatttgcataaatccgaccatcaagttttt 234  Q
    |||  ||||| |||||| ||||||||||||||||||||    
T  32440081 atttggtacacttgcatgaatccgaccatcaagttttt 32440118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 620
Target Start/End: Original strand, 2165314 - 2165415
Alignment:
Q  517 atcctgcagagttcctatctccatcggcaagcattacaaagaagagaggtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagac 616  Q
    |||||||| ||||||||| ||||||||||| ||||| | |||||||  ||||| |||||||||||| ||||  |||||| |||||||||||||| |||||    
T  2165314 atcctgcaaagttcctatatccatcggcaaacattatagagaagag--gtactttgtgatgttcttgatattgatgtttgtcatattttacttggtagac 2165411  T
Q  617 cttg 620  Q
    ||||    
T  2165412 cttg 2165415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 25070233 - 25070140
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||| ||||||||||||| |||||  ||||||||||||||||||| |||| ||  |||| |||||||| ||||||||| ||| |||||||||    
T  25070233 ttgttcccaaataagtaacgtgaattgtctagttggaacgacaatccttgtggatgcgatactctacttacactttattatttgataaacgatt 25070140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 8503063 - 8503214
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagta 204  Q
    |||||| ||||| |||||||| ||||   | |||| || ||||||||||||| ||| |||  ||||||||  || ||||||||||||||||||||  |||    
T  8503063 ttgttcccaaattagtaacgcaaattgtttggttgaaatgacaatccatgtggatatgatcctctacttatcacgttattacttggtaaacgatttggta 8503162  T
Q  205 catttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    || |||| ||||| ||||||||| |||||  |||||||||  ||||||||||    
T  8503163 cacttgcctaaatacgaccatcatgttttgggcgccgttgctggggattgtt 8503214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 15454914 - 15454732
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtttta 100  Q
    ||||||||||||| ||||| ||||| |||||| |||||  |||||||| |||| ||| |||||||||  |  ||||||||| | || ||||    |||||    
T  15454914 ccactaacattctccaatctaaacaagtaaaccttgctttgttgcaaacagatcaaactgcaaaacccttttaccctttatatattttttt----tttta 15454819  T
Q  101 tttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattact 187  Q
    |||| | |||  ||||||||||||  ||||| ||||||||||| |||||||    || ||| |||| |||||||| |||||||||||    
T  15454818 tttaatagtttccaaataagtaacatgaattgcctagttggaatgacaatctcgatggatatgatactctacttacactttattact 15454732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 17349426 - 17349360
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatt 208  Q
    ||||||||||  |||| ||| |||| |||||||| ||||||||||||||||||||||| ||||||||    
T  17349426 aacgacaatctttgtggatacgatactctacttacactttattacttggtaaacgatttagtacatt 17349360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 25937055 - 25936935
Alignment:
Q  77 tttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa 176  Q
    |||||||||||||||||| | || |||| ||||||  ||||||||||| | |||| |||||||||||| |  || |||||| ||| |||  ||||||||     
T  25937055 tttatcttttattttattttattgttta-ttgttcctaaataagtaacacaaattgcctagttggaacaatcatacatgtggatatgattctctacttac 25936957  T
Q  177 actttattacttggtaaacgat 198  Q
    ||||||||||||  ||||||||    
T  25936956 actttattacttaataaacgat 25936935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 18553909 - 18554021
Alignment:
Q  115 aataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcata 214  Q
    ||||||||||| |||||  |||||||||| |||||||| |||  ||| |||| |||| ||| |||||| |||||| ||| | |||  ||||| |||| ||    
T  18553909 aataagtaacgtgaattgtctagttggaatgacaatccctgtagatatgatactctaattatactttactacttgataaccaattttgtacacttgccta 18554008  T
Q  215 aatccgaccatca 227  Q
    |||||||||||||    
T  18554009 aatccgaccatca 18554021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 27418570 - 27418389
Alignment:
Q  2 cactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgtttta 100  Q
    |||||||| ||||||||||||| |||||| |||||| | ||| |||| ||||||||||| ||||  ||||||||||| | ||||||| ||||   |||||    
T  27418570 cactaacagtctgcaatcaaaataggtaagctttgcgctgttccaaacagattaaattg-aaaaattctaaacccttatctcttttaattta---tttta 27418475  T
Q  101 tttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattactt 188  Q
    ||   ||||||  ||||||||||| ||||||   | |||| || || |||||||||| ||| |||| ||||||||  ||||||||||||    
T  27418474 tt---ttgttccaaaataagtaacacgaattgtttggttgaaatgataatccatgtggatatgatactctacttatcactttattactt 27418389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 30900750 - 30900822
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    |||| |||||||||||||| ||||| |  ||||||| |||| |||||||||||||||||||| ||||||||||||    
T  30900750 ctaatattctgcaatcaaa-caggtgacttttgctctgttgtaaatagattaaattgcaaaa-ctctaaaccctt 30900822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 17743505 - 17743591
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    ||||| |||||||||| ||| |||| ||||||||  |||||||||||||||||||||||  ||||| ||||  | |||||||||||||    
T  17743505 aacgataatccatgtggatacgatactctacttatcactttattacttggtaaacgatttggtacacttgc-catatccgaccatcaa 17743591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 18932295 - 18932153
Alignment:
Q  114 aaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcat 213  Q
    |||||||||||  |||||  ||||||||||| |||| | | ||| ||  ||||  ||||||| | | ||||||| |||||||| ||  ||||| | || |    
T  18932295 aaataagtaacatgaattgtctagttggaacaacaaccgaagtggatgtgataccctacttacattgtattactaggtaaacggtttggtacactagctt 18932196  T
Q  214 aaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    | || |||||||||||||||| |||  ||||||||||||||||    
T  18932195 atattcgaccatcaagtttttggcgttgttgtcggggattgtt 18932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 20174664 - 20174722
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||||||||||| | | |||| ||||||||  |||||||||||||||||||||||    
T  20174664 aacgacaatccatgtggaaatgatactctacttatcactttattacttggtaaacgatt 20174722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 29719260 - 29719318
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||||||| |||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  29719260 aacgacaatccttgtggatacgataatctacttatcactttattacttggtaaacgatt 29719318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 32085533 - 32085479
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaac 195  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||||    
T  32085533 aacgacaatccatgtggatatgatactctacttatcactttattacttggtaaac 32085479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 28770355 - 28770431
Alignment:
Q  15 caatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaac-cctttatcttttatttt 91  Q
    |||||||||||||||||||||| |  |||||||  | |||||||||||||| |||||||| | ||| |||||||||||    
T  28770355 caatcaaaacaggtaaactttgttatgttgcaagcaaattaaattgcaaaa-ctctaaactcttttctcttttatttt 28770431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 19287526 - 19287455
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccc 76  Q
    ||||||||||||||| ||||||||||||| ||  || ||| |||| | |||||||| ||||| ||||||||||    
T  19287526 ctaacattctgcaatgaaaacaggtaaaccttattcagttacaaacaaattaaattacaaaa-ctctaaaccc 19287455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 23011792 - 23011844
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaa 194  Q
    ||||||||||| |||| |||  ||| |||||||| ||||||||||||||||||    
T  23011792 aacgacaatccttgtggatacaataatctacttacactttattacttggtaaa 23011844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 25618626 - 25618574
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaa 193  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||    
T  25618626 aacgacaatccatgtggatatgatactctacttatcactttattacttggtaa 25618574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 7148188 - 7147944
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgtttt 99  Q
    |||| |||||||||||||||||||||||||||| ||| | |||||||| | ||||| ||  |||| |||| ||| ||| | ||||||||||||||         
T  7148188 ccaccaacattctgcaatcaaaacaggtaaactatgcactgttgcaaacaaattaactttgaaaaactctgaactcttatctcttttattttatt----- 7148094  T
Q  100 atttagttgttctcaaataagtaacgcgaatt-tcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgat 198  Q
          |||||| ||||||||||||| ||||  | || |||| |||||||||||||||| | | |||| ||||||||   |||| |||||||||||||||    
T  7148093 ------ttgttcccaaataagtaacgtgaatcgttct-gttgaaacgacaatccatgtggagacgatactctacttattttttagtacttggtaaacgat 7148001  T
Q  199 tcagtacatttgcataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    |  |||||||||| | |||||||||||||||||||| ||||||||||  |||||||||    
T  7148000 ttggtacatttgcct-aatccgaccatcaagtttttggcgccgttgttagggattgtt 7147944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 12805919 - 12806033
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgcc 240  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||| ||||  ||||| |||| ||| |||||||||||||||||| | |||    
T  12805919 aacgacaatccatgtggatatgatactctacttatcactttattacttggtaaatgatttggtacacttgcctaa-tccgaccatcaagtttttggggcc 12806017  T
Q  241 gttgtcggggattgtt 256  Q
    |||||||| |||||||    
T  12806018 gttgtcggagattgtt 12806033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 27542881 - 27543001
Alignment:
Q  74 ccctttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaattt-cctagttggaacgacaatccatgtgaataagatattctac 172  Q
    ||||||||||||||||||||||||||||      |||| |||||||| ||| |||| || |||||||||||| ||||| |||||| ||| |||| |||||    
T  27542881 ccctttatcttttattttattgttttat------gttcccaaataagcaacacgaaattgcctagttggaacaacaattcatgtggatacgatactctac 27542974  T
Q  173 ttaaactttattacttggtaaacgatt 199  Q
    ||| |||||||| ||||||||||||||    
T  27542975 ttatactttatttcttggtaaacgatt 27543001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 21074521 - 21074659
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaac 195  Q
    ||||||||  |||||| ||| ||||||||| ||||| | |||||||||||||||| |  ||| ||| |||| |||||||| ||||||||||||| || |     
T  21074521 ttttattttcttgttcccaagtaagtaacgtgaattacatagttggaacgacaattctggtggatacgatactctacttacactttattacttgatagat 21074620  T
Q  196 gattcagtacatttgcataaatccgaccatcaagttttt 234  Q
    ||||  ||||| |||||||||||| | ||||||||||||    
T  21074621 gatttggtacagttgcataaatccaatcatcaagttttt 21074659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 23056064 - 23056283
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattg-ttttatt 102  Q
    |||||||||| | |||||||||||||||  |||||| |||| |||||||| ||||||||||||| ||  |||| |||||||| ||||||||| |||||||    
T  23056064 ctaacattctaccatcaaaacaggtaaatcttgctctgttgtaaatagatcaaattgcaaaaccccttcacccgttatctttaattttattgtttttatt 23056163  T
Q  103 tagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcag 202  Q
    ||  | ||| |||||| ||||| | |  | ||   || ||| ||||| |||| || ||| |||| || ||||| |||| ||||||||||||||| ||       
T  23056164 taaatattcccaaataggtaacactatctgcc---ttagaatgacaacccatatggatacgatactcaacttacacttcattacttggtaaacgttttga 23056260  T
Q  203 tacatttgcataaatccgaccat 225  Q
    |||| |||||||||| |||||||    
T  23056261 tacacttgcataaattcgaccat 23056283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 21019616 - 21019717
Alignment:
Q  133 cctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttt 232  Q
    |||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||| | ||||  ||||  |||| ||||||| | |||||| |||    
T  21019616 cctagttggaacgacaatccttgtggataagatactctacttatactttattacttggtagatgatttggtactgttgcctaaatccaatcatcaatttt 21019715  T
Q  233 tt 234  Q
    ||    
T  21019716 tt 21019717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 20397782 - 20397713
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaacc 75  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| | |||||||||||||| |||||||||    
T  20397782 ctaacattctgcaat-aaaacaggtaaattttgctctgttgcaaacaaattaaattgcaaaa-ctctaaacc 20397713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 8557032 - 8557211
Alignment:
Q  5 taacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgttttattta 104  Q
    ||||||||||||||||||| ||||||||||| ||  ||| |||| | |||| ||||||||| |||||||||| ||||| |||      || |||||||      
T  8557032 taacattctgcaatcaaaagaggtaaactttactatgtttcaaacatattatattgcaaaa-ctctaaaccc-ttatccttt------ttattttatt-- 8557121  T
Q  105 gttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaa 194  Q
     |||||| |||||||||||||| ||||   ||  || |||||||||||||||| ||| |||| ||||||||  ||||||||||| ||||||    
T  8557122 -ttgttcccaaataagtaacgcaaattgtttaaatgaaacgacaatccatgtggatacgatactctacttatcactttattactcggtaaa 8557211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 20339758 - 20339850
Alignment:
Q  107 tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||| |||||||||||   |||| ||| |||| ||| ||||  |||||||||| |||| |||||||| | |||||||||||||||||||||    
T  20339758 tgttcttaaataagtaacatcaattgcctggttgaaacaacaacacatgtgaatacgatactctacttacattttattacttggtaaacgatt 20339850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 25756791 - 25756659
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaa 194  Q
    ||||||||  |||||| |||||||||||| | |||| ||||||| ||||||||||   |||| ||| |||| ||||||||   |||||||| ||| ||||    
T  25756791 ttttattttattgttcccaaataagtaacacaaattgcctagttagaacgacaatttttgtggatacgatactctacttacttctttattatttgataaa 25756692  T
Q  195 cgattcagtacatttgcataaatccgaccatca 227  Q
     ||||  ||||| |||| |||||||||||||||    
T  25756691 tgattttgtacacttgcctaaatccgaccatca 25756659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 932774 - 932697
Alignment:
Q  179 tttattacttggtaaacgattcagtacatttgc-ataaatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    |||||||||| |||||||||| | |||| |||| || ||||||| ||||||||| |||||||| |||||||||||||||    
T  932774 tttattacttagtaaacgattga-tacacttgccatcaatccgatcatcaagttatttgcgccattgtcggggattgtt 932697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 6289967 - 6289888
Alignment:
Q  148 aatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||||||||| ||| |||| ||||||||  |||||||||||||||||||||||   ||||||||| | |||||||||||||    
T  6289967 aatccatgtggatatgatactctacttatcactttattacttggtaaacgatttgatacatttgcct-aatccgaccatca 6289888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 18736722 - 18736758
Alignment:
Q  163 gatattctacttaaactttattacttggtaaacgatt 199  Q
    ||||||||||||| |||||||||||||||||||||||    
T  18736722 gatattctacttatactttattacttggtaaacgatt 18736758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 12759502 - 12759371
Alignment:
Q  97 tttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaac 195  Q
    |||||||  |||||| ||||||||||| ||| ||||  |  ||| ||||||||| | |||| ||| |||| ||||||||  |||||||||||||||||||    
T  12759502 tttattttattgttcccaaataagtaaagcggattttttgtttgaaacgacaatacttgtggatacgatactctacttatcactttattacttggtaaac 12759403  T
Q  196 gattcagtacatttgcataaatccgaccatca 227  Q
     |||  ||||| |||  |||||| ||||||||    
T  12759402 aatttggtacacttgtctaaatcagaccatca 12759371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 21301985 - 21301930
Alignment:
Q  145 gacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||||||||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  21301985 gacaatccatgtggatacgatactctacttatcactttattacttggtaaacgatt 21301930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 21825904 - 21825955
Alignment:
Q  148 aatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||||||| ||| |||| |||||||| ||||||||||| |||||||||||    
T  21825904 aatccatgtggatacgatactctacttacactttattactcggtaaacgatt 21825955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 821543 - 821601
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||| |||||||||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  821543 aacgaaaatccatgtggatacgatactctacttatcactttattacttggtaaacgatt 821601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13908151 - 13908225
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    ||||||||||||| || ||||| ||||||||  |||||| || |||||||||||||||| ||||  ||||||||||||    
T  13908151 ccactaacattctacattcaaa-caggtaaaacttgctctgtagcaaatagattaaatttcaaa--ctctaaaccctt 13908225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 28729050 - 28728928
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagta 204  Q
    |||||| |||| ||||||||||||||   | |||| |||||||||| ||||| ||| |||| ||||||||  ||||||||||||| ||||  |||    |    
T  28729050 ttgttcccaaacaagtaacgcgaattgtttggttgaaacgacaatctatgtggatacgatactctacttatcactttattacttgataaattatttgaca 28728951  T
Q  205 catttgcataaatccgaccatca 227  Q
    || |||| |||||||||||||||    
T  28728950 cacttgcctaaatccgaccatca 28728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 6290098 - 6290038
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaa 65  Q
    ||||||||||||||| |||||| || |||||||||| |||||||| ||| ||||||| ||||    
T  6290098 ctaacattctgcaattaaaacaagt-aactttgctctgttgcaaacagaataaattgaaaaa 6290038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 31286048 - 31286101
Alignment:
Q  146 acaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    ||||||| |||| ||| ||||||||| ||| |||||||||||||||||| ||||    
T  31286048 acaatccctgtggatacgatattctagttacactttattacttggtaaatgatt 31286101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 821417 - 821476
Alignment:
Q  6 aacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    ||||||||||||| ||| |||||||||||| ||| |||||||| | ||||||||| |||||    
T  821417 aacattctgcaattaaa-caggtaaacttttctctgttgcaaacatattaaattgaaaaac 821476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 26540994 - 26540880
Alignment:
Q  113 caaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgca 212  Q
    |||||||||||||| ||||  |||||||||| || ||||| |||| ||| |||| |||||||| |||||||||||||||||||||||  ||||| ||||     
T  26540994 caaataagtaacgcaaattgtctagttggaatgataatccttgtggatacgatactctacttacactttattacttggtaaacgatttggtacacttgcc 26540895  T
Q  213 taaatccgaccatca 227  Q
    |||||||||||||||    
T  26540894 taaatccgaccatca 26540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 6501454 - 6501534
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttt 85  Q
    ||||||||||||||| ||||||| |||||||||||  ||| ||||||||||||||||||||| |||||||||||| ||||||    
T  6501454 ctaacattctgcaattaaaacagctaaactttgctatgtttcaaatagattaaattgcaaaa-ctctaaacccttcatcttt 6501534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 10064573 - 10064710
Alignment:
Q  115 aataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcata 214  Q
    ||||||||| | ||||| ||||||| |||||| ||||| |||| ||| |||||||||| |  | |||||||||||||||||||||  ||||| |||  ||    
T  10064573 aataagtaatgagaattgcctagtttgaacgaaaatccttgtggatatgatattctacctgcattttattacttggtaaacgatttggtacacttgttta 10064672  T
Q  215 aatccgaccatcaagttttttgcgccgttgtcggggatt 253  Q
    ||| |||||||||| |||||  | |||||||||||||||    
T  10064673 aat-cgaccatcaaatttttgacaccgttgtcggggatt 10064710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 24267683 - 24267756
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||| | |||||||||||||| ||||||||||||    
T  24267683 ctaacattctgcaatcaaaacaagtaaattttgctctgttgcaaacatattaaattgcaaaa-ctctaaaccctt 24267756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 33712801 - 33712647
Alignment:
Q  75 cctttatcttttattttattgtttt-atttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctact 173  Q
    |||||||||||||||| ||| |||| ||||  ||||||  |||||||||| ||||||||||||||||||||||||||   | | ||||  ||||| || |    
T  33712801 cctttatcttttatttaattatttttattttcttgttcctaaataagtaatgcgaatttcctagttggaacgacaataactctaaatacaatattataat 33712702  T
Q  174 ta-aactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    ||  ||||||||| |||||||| ||||  ||||| |||| ||||||||||||||||    
T  33712701 tatcactttattatttggtaaa-gatttggtacacttgcctaaatccgaccatcaa 33712647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 12208671 - 12208601
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgc 211  Q
    |||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||| |||||| ||||    
T  12208671 aacgacaatccatgtggatatgatattctacttatcactttattacttggtaaacgatttagtacacttgc 12208601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 17610285 - 17610343
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgatt 199  Q
    |||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||    
T  17610285 aacgacaatccatgtggatacgatactctacttataactttattacttggtaaacgatt 17610343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 24306950 - 24307028
Alignment:
Q  107 tgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttatta 185  Q
    ||||| ||||||||||||| ||||| | |||||| ||||||||||| | |||||| |||| |||||||| |||||||||    
T  24306950 tgttcccaaataagtaacgtgaattgcttagttgaaacgacaatccctatgaatacgatactctacttacactttatta 24307028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 21847703 - 21847646
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||||||||||||| |||  ||| |||||||| |||||||||||||||||||||||    
T  21847703 aacgacaatccatgtggatacaatactctacttagactttattacttggtaaacgatt 21847646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 25958214 - 25958121
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||| ||||||||||||   ||||  || ||||||||||||||||||||| ||| |||| |||| ||| |||| ||||||| ||||||||||    
T  25958214 ttgttcccaaataagtaacataaattgtctggttggaacgacaatccatgtggatatgatactctatttacacttcattactttgtaaacgatt 25958121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 27117619 - 27117834
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt-tatcttttattttattgttttatt 102  Q
    |||||||| ||||||||||||||||||| ||| ||| ||||||||| |||||| ||   ||| | |||||||||| | || |||||||||||            
T  27117619 ctaacattttgcaatcaaaacaggtaaaattttctctgttgcaaattgattaacttttcaaaacactaaacccttatctcgtttattttatt-------- 27117710  T
Q  103 tagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattca 201  Q
       |||||| | ||||||||||||  |||   | |||| ||||||||| ||||||||||  ||| ||||||||  |||||||||||||||||||||||      
T  27117711 ---ttgttccctaataagtaacgcagattgtttggttgaaacgacaattcatgtgaatacaatactctacttatcactttattacttggtaaacgatttg 27117807  T
Q  202 gtacatttgcataaatccgaccatcaag 229  Q
    ||| | |||| | |||||||||||||||    
T  27117808 gtaaacttgcct-aatccgaccatcaag 27117834  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 17837623 - 17837500
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacgattcagta 204  Q
    |||||| |||||||||||||||||||   |||    || |||||||| |||| ||| |||| |||||||| |||||||||||||||||||| |||  |||    
T  17837623 ttgttcccaaataagtaacgcgaattgtttagacaaaatgacaatccttgtggatatgatactctacttataactttattacttggtaaacaatttggta 17837524  T
Q  205 catttgcataaatccgaccatcaag 229  Q
    || |||| | |||||||||||||||    
T  17837523 cacttgcct-aatccgaccatcaag 17837500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 24306299 - 24306390
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctactta-aactttattacttggtaaacga 197  Q
    ||||||||||||||||||||||||||   | |||| |||| |||||| |||| ||| |||| ||||||||  |||||||||||||||||||||    
T  24306299 ttgttctcaaataagtaacgcgaattatttggttgaaacg-caatccctgtggatacgatactctacttatcactttattacttggtaaacga 24306390  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 635
Target Start/End: Complemental strand, 8966555 - 8966485
Alignment:
Q  565 gtactctgtgatgttcttaatatgaatgtttttcatattttacttgatagaccttgacaatttgataatga 635  Q
    ||||| |||||||||||| |||  ||||||| ||||||||||||||  |||| |||||| |||||||||||    
T  8966555 gtactatgtgatgttcttgatacaaatgtttgtcatattttacttggcagactttgacagtttgataatga 8966485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 24281347 - 24281277
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgc 211  Q
    ||||| |||||||||| ||| |||| ||||||||  |||||||||||||||||||||||  ||||||||||    
T  24281347 aacgataatccatgtggatatgataatctacttatcactttattacttggtaaacgatttggtacatttgc 24281277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 13345365 - 13345419
Alignment:
Q  142 aacgacaatccatgtgaataagatattctactta-aactttattacttggtaaac 195  Q
    |||||||||||||||| ||| |||| ||||||||  |||||||||||||||||||    
T  13345365 aacgacaatccatgtggatatgatactctacttatcactttattacttggtaaac 13345419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 16787755 - 16787813
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    |||||||||| ||||||||| |||| ||||||||  ||||||||||||| |||||||||    
T  16787755 aacgacaatctatgtgaatacgatactctacttatcactttattacttgataaacgatt 16787813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 21449159 - 21449101
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgatt 199  Q
    ||||||||||| |||| ||| |||| ||||||||  |||||||||||||||||||||||    
T  21449159 aacgacaatccttgtggatacgatactctacttatcactttattacttggtaaacgatt 21449101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 23038041 - 23038129
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagtt 231  Q
    |||||||||||||||| ||| |||| || |||||  |||||||||||||||||||||||  ||||| |||| | ||||| |||||||||||    
T  23038041 aacgacaatccatgtggatacgatactc-acttatcactttattacttggtaaacgatttggtacacttgcct-aatccaaccatcaagtt 23038129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 8966689 - 8966660
Alignment:
Q  257 cgaggaggaatctgatgagagggtaaattt 286  Q
    ||||||||||||||||||||||||||||||    
T  8966689 cgaggaggaatctgatgagagggtaaattt 8966660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 22664259 - 22664206
Alignment:
Q  159 ataagatattctacttaa-actttattacttggtaaacgattcagtacatttgc 211  Q
    |||||||| ||||||||  |||||||||||||||||||||||  ||||||||||    
T  22664259 ataagatactctacttatcactttattacttggtaaacgatttggtacatttgc 22664206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17017612 - 17017644
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaact 33  Q
    |||||||||||||||||||||||||||| ||||    
T  17017612 ccactaacattctgcaatcaaaacaggttaact 17017644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 13888 - 14029
Alignment:
Q  96 ttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatat---tctacttaaactttattacttggta 192  Q
    ||||||||  |||||| |||||||||||||| ||||  |||||||||| |||||||||||||   | |||||   |||||||| |||| |||||||||||    
T  13888 ttttattttattgttcccaaataagtaacgctaattgtctagttggaatgacaatccatgtgttcacgatataattctacttacacttaattacttggta 13987  T
Q  193 aacgattcagtacatttgcataaatccgaccatcaagttttt 234  Q
    |||||||   |||| |||| |||||| |||||||||||||||    
T  13988 aacgatttgatacacttgcctaaatctgaccatcaagttttt 14029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 13809 - 13902
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctttatcttttattttattgtt 97  Q
    ||||||||||  |||||||||| |||||  |||||| | |||||| | || |||||| |||||| ||  ||| |||||||||||||||||||||    
T  13809 ctaacattctataatcaaaacatgtaaatcttgctctgctgcaaacaaatcaaattgaaaaacccctttaccttttatcttttattttattgtt 13902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 7917 - 7843
Alignment:
Q  170 tacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatcaagttttttgcgccgttg 244  Q
    |||||||||||||||||||||||||||||| |||||| || | ||||| |||||||||||||||| |||||||||    
T  7917 tacttaaactttattacttggtaaacgattgagtacacttacctaaattcgaccatcaagtttttggcgccgttg 7843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 12246 - 12092
Alignment:
Q  74 ccctttatcttttattttattgttttatttagttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctact 173  Q
    ||||||||||||||||||||| | || |||| |||||| |||||||||| ||| | ||  || |||| || |||||||||| |||||| |||| | ||||    
T  12246 ccctttatcttttattttattttattgttta-ttgttcccaaataagtagcgcaagttgtcttgttgaaatgacaatccatatgaatacgatagtttact 12148  T
Q  174 taa-actttattacttggtaaacgattcagtacatttgcataaatccgaccatcaa 228  Q
    ||  | ||||||||||||||||| |||  ||||| |||| |||||||||| |||||    
T  12147 tatcagtttattacttggtaaacaatttggtacacttgcctaaatccgacaatcaa 12092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 18641 - 18713
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    ||||||||||||||||||| || |||||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  18641 ctaacattctgcaatcaaa-catgtaaactttgttctgttgcaaacagattaaattgcaaaa-ctctaaaccctt 18713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 222934 - 223006
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaacctctaaaccctt 78  Q
    ||||||||||||||||||| || |||||||||| ||  ||||||| |||||||||||||||| ||||||||||||    
T  222934 ctaacattctgcaatcaaa-catgtaaactttgttctattgcaaacagattaaattgcaaaa-ctctaaaccctt 223006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 15367 - 15419
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaa 56  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  15367 ctaacattctgcaatcaaaacaggtaaacttcgctctgttgcaaacagattaa 15419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1932 - 1869
Alignment:
Q  1 ccactaacattctgcaatcaaaacaggtaaactttgctccgttgcaaatagattaaattgcaaaac 66  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||    
T  1932 ccactaactttctgcaatcaaatc-ggtaa-ctttgctccgttgcaaacagattaaattgcaaaac 1869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 22364 - 22247
Alignment:
Q  128 aatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgattcagtacatttgcataaatccgaccatca 227  Q
    |||| ||||||||  ||||||||||  ||| |||  ||| |||||||| | || |||| |||||||||||||  |||| ||| | ||||| |||||||||    
T  22364 aattgcctagttgatacgacaatcctcgtgcataccatactctacttacatttcattaattggtaaacgatttggtaccttttcctaaattcgaccatca 22265  T
Q  228 agttttttgcgccgttgt 245  Q
    ||||||| ||||||||||    
T  22264 agtttttggcgccgttgt 22247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11421 - 11377
Alignment:
Q  4 ctaacattctgcaatcaaaacaggtaaactttgctccgttgcaaa 48  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  11421 ctaacattctgcaatcaaaacaggtaaactttgctttgttgcaaa 11377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 115732 - 115642
Alignment:
Q  106 ttgttctcaaataagtaacgcgaatttcctagttggaacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    |||||||||||||||||||| |||||| ||||||  |||||||| || |||||||| | ||  ||||||| ||||||||||||  |||||||||    
T  115732 ttgttctcaaataagtaacgtgaattttctagtt-aaacgacaacccctgtgaatacggta--ctacttacactttattacttattaaacgatt 115642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 24982 - 24941
Alignment:
Q  215 aatccgaccatcaagttttttgcgccgttgtcggggattgtt 256  Q
    ||||||||||||| |||||| ||||||||| |||||||||||    
T  24982 aatccgaccatcatgtttttggcgccgttgccggggattgtt 24941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 89883 - 89940
Alignment:
Q  142 aacgacaatccatgtgaataagatattctacttaaactttattacttggtaaacgatt 199  Q
    ||||||||| | |||  ||| |||| |||||||| |||||||||||||||||||||||    
T  89883 aacgacaatacttgtagatatgatactctacttacactttattacttggtaaacgatt 89940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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