View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13208_low_9 (Length: 662)

Name: NF13208_low_9
Description: NF13208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13208_low_9
NF13208_low_9
[»] chr2 (6 HSPs)
chr2 (201-662)||(2675514-2675973)
chr2 (18-182)||(2675959-2676123)
chr2 (608-659)||(9538914-9538965)
chr2 (493-569)||(9539080-9539156)
chr2 (535-584)||(38147059-38147108)
chr2 (574-606)||(9538993-9539025)
[»] chr6 (3 HSPs)
chr6 (492-606)||(7203432-7203546)
chr6 (606-662)||(7203572-7203628)
chr6 (496-548)||(6819614-6819666)
[»] chr3 (8 HSPs)
chr3 (499-607)||(52311811-52311919)
chr3 (493-591)||(3540213-3540311)
chr3 (608-660)||(2652536-2652588)
chr3 (613-660)||(3540066-3540113)
chr3 (608-656)||(52311736-52311784)
chr3 (512-591)||(2652360-2652439)
chr3 (512-565)||(33450040-33450093)
chr3 (578-606)||(3540146-3540174)
[»] chr7 (4 HSPs)
chr7 (608-661)||(19931881-19931934)
chr7 (496-567)||(31852638-31852709)
chr7 (493-548)||(19932007-19932062)
chr7 (517-589)||(23345028-23345100)
[»] chr5 (2 HSPs)
chr5 (496-593)||(3758925-3759022)
chr5 (530-567)||(34708751-34708788)
[»] chr4 (1 HSPs)
chr4 (496-584)||(54209036-54209124)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 201 - 662
Target Start/End: Complemental strand, 2675973 - 2675514
Alignment:
Q  201 gaagatcattgtttctgttcttcatggtgaggtcattagtgatatgatgaagtaagtcattattattatttcaattataataaactagatcatatcaccc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2675973 gaagatcattgtttctgttcttcatggtgaggtcattagtgat--gatgaagtaagtcattattattatttcaattataataaactagatcatatcaccc 2675876  T
Q  301 cctaatgccaaaagaaaatccagaatagttgcataacagtcttgtataaaataatatatccattggtaccaattttcaattcaatattattcaaacacgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2675875 cctaatgccaaaagaaaatccagaatagttgcataacagtcttgtataaaataatatatccattggtaccaattttcaattcaatattattcaaacacgc 2675776  T
Q  401 aggtgtgaaaaggttccttccgttaaaatttgataaccaaaagcaggtgtaaaaaacaacaagttgtgattcaagctcaagccttataatatgatttctg 500  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  2675775 aggtgtgaaaaggttccttccattaaaatttgataaccaaaagcaggtgtaaaaagcaacaagttgtgattcaagctcaagccttataatatgatttttg 2675676  T
Q  501 ctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgccactgaaaa 600  Q
    |||||||| | ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  2675675 ctctttataaaaactgttttgctcgttcccaaaataaatgtccatattgtccctgcataagttaacttacgttgcgtgagttaagtcacgccactgaaaa 2675576  T
Q  601 ttcatatgttggttttcttatttttatttagcttcttcagtagtgttgtcatttataatgtt 662  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  2675575 ttcatacgttggttttcttatttttatttagcttcttcggcagtgttgtcatttataatgtt 2675514  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 2676123 - 2675959
Alignment:
Q  18 aattgttcttgacactctttcatctataataaaacactcgtatctgatagataaggagttgtatttttctttaaaagatctttgatataaatagtccatg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  2676123 aattgttcttgacactctttcatctataataaaacacgcgtatctgatagacaaggagttgtatttttctttgaaagatctttgatataaatagtccatg 2676024  T
Q  118 gaatttttccacaaaagaattaacaaaatgattttggccaaccattgaaggaagatcattgtttc 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2676023 gaatttttccacaaaagaattaacaaaatgattttggccaaccattgaaggaagatcattgtttc 2675959  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 608 - 659
Target Start/End: Complemental strand, 9538965 - 9538914
Alignment:
Q  608 gttggttttcttatttttatttagcttcttcagtagtgttgtcatttataat 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9538965 gttggttttcttatttttatttagcttcttcagtagtgttgtcatttataat 9538914  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 9539156 - 9539080
Alignment:
Q  493 gatttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttg 569  Q
    ||||||||||||||| || |||| |||||||| ||| |||| ||||||||||||||  |||||||||||||||||||    
T  9539156 gatttctgctctttaccaaaactattttgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttg 9539080  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 38147108 - 38147059
Alignment:
Q  535 taaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaa 584  Q
    ||||||||||||||| | |||| | |||||||||| ||||||||||||||    
T  38147108 taaatgttcatattacctctgcgtgagttaacttgcgctgcgtgagttaa 38147059  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 606
Target Start/End: Complemental strand, 9539025 - 9538993
Alignment:
Q  574 gcgtgagttaagtcacgccactgaaaattcata 606  Q
    |||||||||||||||| ||||||||||||||||    
T  9539025 gcgtgagttaagtcacaccactgaaaattcata 9538993  T

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Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 492 - 606
Target Start/End: Original strand, 7203432 - 7203546
Alignment:
Q  492 tgatttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgc 591  Q
    |||||||||||||||| || ||||||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  7203432 tgatttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgtttatattgtccctgcgtaagttaacttgcattgcgtgagttaagtcacgc 7203531  T
Q  592 cactgaaaattcata 606  Q
    || ||||||||||||    
T  7203532 cattgaaaattcata 7203546  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 606 - 662
Target Start/End: Original strand, 7203572 - 7203628
Alignment:
Q  606 atgttggttttcttatttttatttagcttcttcagtagtgttgtcatttataatgtt 662  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7203572 atgttggttttcttatttttatttagcttcttcaatagtgttgtcatttataatgtt 7203628  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 6819666 - 6819614
Alignment:
Q  496 ttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatatt 548  Q
    |||||||||||| || ||| ||||||||||||| |||||||||||| ||||||    
T  6819666 ttctgctctttaccaaaacagttttgctcgttcccaaaataaatgtccatatt 6819614  T

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Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 499 - 607
Target Start/End: Complemental strand, 52311919 - 52311811
Alignment:
Q  499 tgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgccactgaa 598  Q
    ||||||||| || || |||||||||||||| |||| |||||||  |||||  |||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  52311919 tgctctttaccaaaattgttttgctcgttcccaaagtaaatgtctatattgcccctgcgtaagttaacttgcgctgcgtgagttaagtcacgctactgaa 52311820  T
Q  599 aattcatat 607  Q
    |||||||||    
T  52311819 aattcatat 52311811  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 493 - 591
Target Start/End: Complemental strand, 3540311 - 3540213
Alignment:
Q  493 gatttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgc 591  Q
    ||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||   | ||| |||||||||||| | |||||||||||||||||||    
T  3540311 gatttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgtccatattgctcttgcgtaagttaacttgcggtgcgtgagttaagtcacgc 3540213  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 608 - 660
Target Start/End: Original strand, 2652536 - 2652588
Alignment:
Q  608 gttggttttcttatttttatttagcttcttcagtagtgttgtcatttataatg 660  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2652536 gttggtttttttatttttatttaacttcttcagtagtgttgtcatttataatg 2652588  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 613 - 660
Target Start/End: Complemental strand, 3540113 - 3540066
Alignment:
Q  613 ttttcttatttttatttagcttcttcagtagtgttgtcatttataatg 660  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3540113 ttttcttatttttatttagcttcttcagtggtgttgtcatttataatg 3540066  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 608 - 656
Target Start/End: Complemental strand, 52311784 - 52311736
Alignment:
Q  608 gttggttttcttatttttatttagcttcttcagtagtgttgtcatttat 656  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  52311784 gttggttttcttatttgtatttagcttcttcaggagtgttgtcatttat 52311736  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 591
Target Start/End: Original strand, 2652360 - 2652439
Alignment:
Q  512 aactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgc 591  Q
    ||||||||||||||||  |||| |||||||  |||||  |||| | |||||||||||| |||||||||||||| ||||||    
T  2652360 aactgttttgctcgtttccaaagtaaatgtctatattgcccctacgtaagttaacttgcgctgcgtgagttaactcacgc 2652439  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 565
Target Start/End: Complemental strand, 33450093 - 33450040
Alignment:
Q  512 aactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaa 565  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||| | ||||||    
T  33450093 aactgttttgctcattctcaaaataaatgtccatattgtccctgcgtgagttaa 33450040  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 606
Target Start/End: Complemental strand, 3540174 - 3540146
Alignment:
Q  578 gagttaagtcacgccactgaaaattcata 606  Q
    |||||||||||||||||||||||||||||    
T  3540174 gagttaagtcacgccactgaaaattcata 3540146  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 608 - 661
Target Start/End: Complemental strand, 19931934 - 19931881
Alignment:
Q  608 gttggttttcttatttttatttagcttcttcagtagtgttgtcatttataatgt 661  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19931934 gttggttttcttatttttatttagcttcttcactagtgttgtcatttataatgt 19931881  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 567
Target Start/End: Original strand, 31852638 - 31852709
Alignment:
Q  496 ttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaact 567  Q
    |||||||| |||||  ||| |||||||||||| ||||| ||||||||||||||| |||||| ||||||||||    
T  31852638 ttctgctcattatccaaacggttttgctcgttttcaaagtaaatgttcatattacccctgcgtaagttaact 31852709  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 548
Target Start/End: Complemental strand, 19932062 - 19932007
Alignment:
Q  493 gatttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatatt 548  Q
    ||||||||||||||| || |||||||||||| |||| ||||||||||||| |||||    
T  19932062 gatttctgctctttaccaaaactgttttgcttgttcccaaaataaatgtttatatt 19932007  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 589
Target Start/End: Complemental strand, 23345100 - 23345028
Alignment:
Q  517 ttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcac 589  Q
    |||||||| ||| |||||||||||||||||||  || ||| ||||||||||   ||||| |||||||| ||||    
T  23345100 ttttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaactcacgctgcatgagttaactcac 23345028  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 3758925 - 3759022
Alignment:
Q  496 ttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaagtcacgcca 593  Q
    |||||||||||| || ||| ||||| ||| ||| |||| |||||||||||||||||||||| | ||||||| ||| || |||||||||| ||||||||    
T  3758925 ttctgctctttaccaaaacggttttactcattcccaaagtaaatgttcatattatccctgcgtgagttaacatgtactccgtgagttaactcacgcca 3759022  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 567
Target Start/End: Complemental strand, 34708788 - 34708751
Alignment:
Q  530 caaaataaatgttcatattatccctgcataagttaact 567  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  34708788 caaaataaatgtccatattatccctgcatgagttaact 34708751  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 584
Target Start/End: Complemental strand, 54209124 - 54209036
Alignment:
Q  496 ttctgctctttatcataactgttttgctcgttctcaaaataaatgttcatattatccctgcataagttaacttgtgctgcgtgagttaa 584  Q
    ||||||||||||||  ||| ||| || || ||| |||| |||||||||||||||||||||| ||||||||||||  |||| ||||||||    
T  54209124 ttctgctctttatctaaacggttatgttcattcccaaagtaaatgttcatattatccctgcgtaagttaacttgcactgcatgagttaa 54209036  T

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