View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_1 (Length: 701)
Name: NF13209_high_1
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 316 - 674
Target Start/End: Original strand, 43475764 - 43476122
Alignment:
| Q |
316 |
gagttgcccttttgtgatatccgtttaaaatgcctatataattcatttattatttaataaaccatttgtgtattactatttgacatctgattgccctttc |
415 |
Q |
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| T |
43475764 |
gagttgcccttttgtgatatccgtttaaaatgcctttataattcatttattatttaataaaccatttgtgtattactatttgacatctgattgccctttc |
43475863 |
T |
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| Q |
416 |
tacactgcatttagaatggtcccctttgaagtttatggtaaggtaactaaatacatcttgttatggtcctttagagccaacattcaagcatttattcccc |
515 |
Q |
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| T |
43475864 |
tacactgcatttagaatggtcccctttgaagtttatggtaaggtaactaaatacatcttgttatggtcctttagagccaacattcaagcatttattcccc |
43475963 |
T |
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| Q |
516 |
aaatcattgagctaccaacggtttaaaattattatttttctttgttttcctaatcaaaatgaaggcttcataaatccttttgaacatattagacaaatgc |
615 |
Q |
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| T |
43475964 |
aaatcattgagctaccaacggtttaaaaattttttttttctttgttttcctaatcaaaatgaaggcttcataaatccttttgaacgtattggacaaatgc |
43476063 |
T |
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| Q |
616 |
cctcaagttttggtcatttccttttcgtatggttctaattccttgacactctcctttct |
674 |
Q |
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| T |
43476064 |
cctcaagttttggtcatttccttttcgtatggttctaattccttgacactctcctttct |
43476122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 43475440 - 43475724
Alignment:
| Q |
10 |
aagaatatgtaaccaaaggaagcaatgaagaatgcctacatccacatgtaaacaattctgacatggagcaacaatcagagacagatcatcctgcaaatga |
109 |
Q |
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| T |
43475440 |
aagaaaatgtaaccaaaggaagcaatgaagaatgcctacatccacatgtaaacaattctgacatggagcaacaatcagagacagatcatcctgcaaatga |
43475539 |
T |
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| Q |
110 |
tcatgtacctccttttagttctactacagttgaatttgcatcatgtgaggttactgttggagtttagaatcatatcataactatgttagagtagggatct |
209 |
Q |
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| T |
43475540 |
tcatgtacctccttttagttctactacagttgaatttgcatcatgtgaggttactgttggagtttagaatcatatcataactatgttagagtagggatct |
43475639 |
T |
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| Q |
210 |
atgttattaaataagtatttagtagctattattgttgttgtgaatatagaatttggtttcatcataaacgtgtattgcaagtaag |
294 |
Q |
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| T |
43475640 |
atgttattaaataagtatttagtagctattattgttgttgtgaatatagaatttggtttcatcataaacgtgtattgcaagtaag |
43475724 |
T |
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