View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_10 (Length: 460)
Name: NF13209_high_10
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 27790783 - 27790942
Alignment:
| Q |
1 |
ctaaaaacaatatcatttcttattattctcacacgagtaaatgcgactgacagtaccatacaatcttccttgagatcttcaccaatcaaaaataaaatgg |
100 |
Q |
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| T |
27790783 |
ctaaaaacaatatcatttcttattattctcacacgagtaaatgtgactgacagtaccatacaatcttccttgagatcttcaccaatcaaaaataaaatgg |
27790882 |
T |
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| Q |
101 |
atagtggctgagacaagtaaaatattgattaagtatgtgttttccccttttccactcttg |
160 |
Q |
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| T |
27790883 |
atagtggctgagacaagtaaaatattgattaagtatgtgttttccccttttccactcttg |
27790942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 309 - 460
Target Start/End: Original strand, 27791091 - 27791242
Alignment:
| Q |
309 |
ttctagctcaaacaagggatnnnnnnnnttcctcaagacagattcttttcactttcatttgaatgatttaatacctcatcttttctttctttgttcctaa |
408 |
Q |
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| T |
27791091 |
ttctagctcaaacaagggataaaaaaaattcctcaagacagattcttttcactttcatttgaatgatttaatacctcatcttttctttctttgttcctaa |
27791190 |
T |
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| Q |
409 |
cagtggatgcaatgcatctttcctcggacaagtatctcgtatcttcaccatt |
460 |
Q |
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| T |
27791191 |
cagtggatgcaatgcatctttcctcggacaagtatctcgtatcttcaccatt |
27791242 |
T |
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