View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_11 (Length: 445)
Name: NF13209_high_11
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 35060006 - 35059591
Alignment:
| Q |
10 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35060006 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatat |
35059909 |
T |
|
| Q |
110 |
cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059908 |
cattaactacttacc-tattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
35059810 |
T |
|
| Q |
210 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35059809 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaagat |
35059710 |
T |
|
| Q |
310 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtcttaattttcagctctctatgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059709 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtcttaattttcagctctctatgt |
35059610 |
T |
|
| Q |
410 |
ggaattttatgcgtttatt |
428 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
35059609 |
ggaattttatgcgtttatt |
35059591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 43021308 - 43020922
Alignment:
| Q |
10 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43021308 |
attattctacagcaaatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatat |
43021209 |
T |
|
| Q |
110 |
cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
209 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43021208 |
cattaactactta-cctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggca |
43021110 |
T |
|
| Q |
210 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggat |
309 |
Q |
| |
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||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||| ||| |
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| T |
43021109 |
tgt-gaactatgcagtgcttaagactcatccgagt---ttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagat |
43021014 |
T |
|
| Q |
310 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtcttaattttcagct |
401 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| | |||||||||| ||||||| |||||||||||| ||||||||||||| |
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|
| T |
43021013 |
cgagaatttggtagagatgtgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctattgttttaattttcagct |
43020922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 42810459 - 42810100
Alignment:
| Q |
32 |
ttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatatcattaactacttaccctattga |
131 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||| | || ||| |
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| T |
42810459 |
ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacac-aagacatttttccatgtcattaactactta-catagtga |
42810362 |
T |
|
| Q |
132 |
atatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcagtgcttga |
231 |
Q |
| |
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|| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||| ||||||| | |
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|
| T |
42810361 |
atttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcat-ttgaactatggagtgcttaa |
42810264 |
T |
|
| Q |
232 |
gactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtga |
331 |
Q |
| |
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|| ||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42810263 |
gagtcatcgaagt------ttgtcttattgcttttaatgagtttaattctttcatggaacagggacttatccaaagatcgagaatttggtagagatgtga |
42810170 |
T |
|
| Q |
332 |
gcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctattgtcttaattttcagct |
401 |
Q |
| |
|
| | |||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||| |
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|
| T |
42810169 |
gtagtgttggagatgtttcttcgtcgaaaccaaaagcagtatgtactttctattgttttaattttcagct |
42810100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 398
Target Start/End: Original strand, 41567405 - 41567544
Alignment:
| Q |
258 |
attgcttttaatgagtttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttg |
357 |
Q |
| |
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|||| |||| || |||||| |||||| ||| |||||||| || |||||||||||||| |||||||| || ||||||| |||||| ||||||||||| | |
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| T |
41567405 |
attgtttttgattagtttatttccta-atgaaacagggatttctccaaggatcgagattttggtagggaagtgagcagtgttggggatgtttcttcaata |
41567503 |
T |
|
| Q |
358 |
aaaccaaaaacagtatgcactttctattgtcttaattttca |
398 |
Q |
| |
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||| ||||||| ||||| ||||| ||||||||||||||||| |
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| T |
41567504 |
aaatcaaaaactgtatgtactttttattgtcttaattttca |
41567544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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