View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_14 (Length: 399)
Name: NF13209_high_14
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 37129866 - 37129520
Alignment:
| Q |
1 |
tttgagatgggcaccaggtggttgcaagatatagatgagagaagacatatttttgttgaagagggagaaacattttgttttt-cactttgaggacacat- |
98 |
Q |
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| T |
37129866 |
tttgagatgggcaccaggtggttgcaagatatagattagagaagacatatttttgttgaagagggagaaacatttttttttttcactttgaggacacatg |
37129767 |
T |
|
| Q |
99 |
acaaaatatagaacattggataaattgaatggttgttatttctttgactaccatgactacatgaaatttcaaccgcaatgaatctaaattcgattttcac |
198 |
Q |
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| T |
37129766 |
acaaaatatagaacatttgataaattgaatggttgttatttctttgactactatgactacatgaaatttcaaccgcaatgaatctaaattcgattttcac |
37129667 |
T |
|
| Q |
199 |
caattacttgaacccgttcacgtcagtttatgtgactttagttcacatacnnnnnnnaaattcaaaatttttatagacaatatctacgtgaat--taaca |
296 |
Q |
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| T |
37129666 |
caattacttgaacccgttcacgtcagtttatgtgactttagttcacatacttttttttaattcaaaaattttatagacaatatttacgtgaatccagaca |
37129567 |
T |
|
| Q |
297 |
acttaagcttatgtgaattgagttcacataagatctagagttaaaaa |
343 |
Q |
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| T |
37129566 |
acttaagcttatgtgaattgagttcacataagatctagagttaaaaa |
37129520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 37121662 - 37121534
Alignment:
| Q |
120 |
aaattgaatggttgttatttctttgactaccatgactacatgaaatttcaaccgcaatgaatctaaattcgattttcaccaattacttgaacccgttcac |
219 |
Q |
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||||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||||| || | ||||||||||||||||||| ||||||||| ||| |
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| T |
37121662 |
aaattaaatggttgttatttctttgactaccgtgaccgcatgaaatttcaactgcaatgaaacttatttcgattttcaccaattacgtgaacccgtccac |
37121563 |
T |
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| Q |
220 |
gtcagtttatgtgactttagttcacatac |
248 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
37121562 |
gtcggtttatgtgactttagttcacatac |
37121534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 37121463 - 37121430
Alignment:
| Q |
310 |
tgaattgagttcacataagatctagagttaaaaa |
343 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
37121463 |
tgaattgagttcacgtaagatctagagttaaaaa |
37121430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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