View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_16 (Length: 370)
Name: NF13209_high_16
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 30275541 - 30275875
Alignment:
| Q |
19 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
118 |
Q |
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| T |
30275541 |
tgcaacgcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
30275640 |
T |
|
| Q |
119 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275641 |
ttatagtatcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
30275740 |
T |
|
| Q |
219 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275741 |
atgtttaataatgtatggtaat--tgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
30275838 |
T |
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| Q |
319 |
gacccagctccgccaaacactccagacacaaggtatt |
355 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
30275839 |
gacccagctccgccaaacactccagacacaaggtatt |
30275875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 7778852 - 7779186
Alignment:
| Q |
19 |
tgcaactcaagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaa |
118 |
Q |
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|||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
7778852 |
tgcaacgcaagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaag |
7778951 |
T |
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| Q |
119 |
ttatagtatcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagta |
218 |
Q |
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||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7778952 |
ttatagtatcagattagagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagta |
7779051 |
T |
|
| Q |
219 |
atgtttaataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaa |
318 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7779052 |
atgtttaataatatatggtaat--tgaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgttcttttgaa |
7779149 |
T |
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| Q |
319 |
gacccagctccgccaaacactccagacacaaggtatt |
355 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
7779150 |
gatccagctccgccaaacactccagacacaaggtatt |
7779186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
158 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
214 |
Q |
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|||||||||||||||| | | ||||||||||| ||||||| || || |||||||||| |
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| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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