View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_18 (Length: 369)
Name: NF13209_high_18
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 34358350 - 34358006
Alignment:
| Q |
16 |
agtttcttgatttataactttatacaagcacatgccaaacaagaatcacaatggcttgttgtatagataaacaaaatatcacagtatcagaatttgttaa |
115 |
Q |
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| T |
34358350 |
agtttcttgatttataactttatacaagcacatgccaaacaagaatcacaatggcttgttgtatagataaacaaaatatcacagtatcagaatttgttaa |
34358251 |
T |
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| Q |
116 |
gagcagttggtgnnnnnnntagtgttctacacttctacttttacatgacattcaaggtgaaaaaggagattttgtgatatcatggtatttggttcttatc |
215 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358250 |
gagcagttggtgaaaaaaatagtgttctacacttctacttctacatgacattcaaggtgaaaaaggagattttgtgatatcatggtatttggttcttatc |
34358151 |
T |
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| Q |
216 |
attatttagaaataaaattgtgtttataaaggggaaagtagatgaggtcaacttaactaagcaacccaaattgagactcattaaagttgtaaagagtttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34358150 |
attatttagaaataaaattgtgtttataaaggggaaagttgatgaggtcaacttaactaagcaacccaaattgagactcattaaagttgtaaagagtttg |
34358051 |
T |
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| Q |
316 |
cattgcaacattgaagtaaacatacatttaacccaacatattctt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34358050 |
cattgcaacattgaagtaaacatacatttaacccaacatagtctt |
34358006 |
T |
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