View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13209_high_2 (Length: 566)
Name: NF13209_high_2
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 6 - 559
Target Start/End: Original strand, 23040966 - 23041519
Alignment:
| Q |
6 |
aagaaaatactcaaagtatattgtttatatctctaatttcctttgttattttaattctttagcaagtttaattaattgtttgaaactgtcattgttaggg |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040966 |
aagaaaatactcaaggtatattgtttatatctctaatttcctttgttattttaattctttagtaagtttaattaattgtttgaaactgtcattgttaggg |
23041065 |
T |
|
| Q |
106 |
aaagagcctttcagagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaa |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
23041066 |
aaagagcctttcagagcatgaactaccgcggcataagttgtatccattgattagtgctgctgatgccaaatttgatcatgtgtcaacggtagaagcgtaa |
23041165 |
T |
|
| Q |
206 |
gaatagcttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaaatgattatttcattttatgtagcctcttgtgcattaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23041166 |
gaatagcttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaaatgattatttcattttatgtagcctcttgtgcattaat |
23041265 |
T |
|
| Q |
306 |
ggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||| ||||||| |
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|
| T |
23041266 |
ggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttcgaggtaacaatggtagagttaaaaagggtgtagaagcttctcgagtaggtg |
23041365 |
T |
|
| Q |
406 |
ctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgctccacatgttaactttaaagatggaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23041366 |
ctgttggaatgattttggctaatgacgaggcttcaggcggtgaaattatatctgacgctcatgtgcttcccgcttcacatgttaactttaaagatggaaa |
23041465 |
T |
|
| Q |
506 |
cgtcatttttaaatatgtcaattacaccaagtaatttttctcccatgatatggg |
559 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23041466 |
cgtcattttaaaatatgtcaattacaccaagtaatttttctcccattatatggg |
23041519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 261 - 559
Target Start/End: Complemental strand, 42743195 - 42742897
Alignment:
| Q |
261 |
ttttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
360 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743195 |
ttttcaaatgattattttattttatgcagcctcctttgcattaatgggtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
42743096 |
T |
|
| Q |
361 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctga |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743095 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctga |
42742996 |
T |
|
| Q |
461 |
cgctcatgtgcttcccgctccacatgttaactttaaagatggaaacgtcatttttaaatatgtcaattacaccaagtaatttttctcccatgatatggg |
559 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42742995 |
cgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaatatgtcaattacaccaagtaatttttctcccatgatatggg |
42742897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 261 - 559
Target Start/End: Complemental strand, 42752554 - 42752256
Alignment:
| Q |
261 |
ttttcaaatgattatttcattttatgtagcctcttgtgcattaatggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
360 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752554 |
ttttcaaatgattattttattttatgcagcctcctttgcattaatgggtctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggta |
42752455 |
T |
|
| Q |
361 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctga |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752454 |
acaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctga |
42752355 |
T |
|
| Q |
461 |
cgctcatgtgcttcccgctccacatgttaactttaaagatggaaacgtcatttttaaatatgtcaattacaccaagtaatttttctcccatgatatggg |
559 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752354 |
cgctcatgtgcttcccgcttcacatgttaactttaaagatggaaacgtcattttaaaatatgtcaattacaccaagtaatttttctcccatgatatggg |
42752256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 42743508 - 42743299
Alignment:
| Q |
6 |
aagaaaatactcaaagtatattgtttatatctctaatttcctttgttattttaattcttta-----gcaagtttaattaattgtttgaaactgtcattgt |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
42743508 |
aagaaaatattcaaggtatattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgt |
42743409 |
T |
|
| Q |
101 |
tagggaaagagcctttcagagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
42743408 |
tagggagagagcctttcagagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaag |
42743309 |
T |
|
| Q |
201 |
cgtaagaata |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
42743308 |
cgtaagaata |
42743299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 42752867 - 42752658
Alignment:
| Q |
6 |
aagaaaatactcaaagtatattgtttatatctctaatttcctttgttattttaattcttta-----gcaagtttaattaattgtttgaaactgtcattgt |
100 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
42752867 |
aagaaaatattcaaggtatattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgt |
42752768 |
T |
|
| Q |
101 |
tagggaaagagcctttcagagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
42752767 |
tagggagagagcctttcagagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaag |
42752668 |
T |
|
| Q |
201 |
cgtaagaata |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
42752667 |
cgtaagaata |
42752658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 304 - 555
Target Start/End: Complemental strand, 42761979 - 42761728
Alignment:
| Q |
304 |
atggatctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtagg |
403 |
Q |
| |
|
||||| |||||||| | ||||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42761979 |
atggagctcttgatccacataaggcaaagggaaaaatattggtatgtcttcgaggtgacagtaatagagttgacaagggtgtggaagcttctcgtgtagg |
42761880 |
T |
|
| Q |
404 |
tgctgttggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgctccacatgttaactttaaagatgga |
503 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
42761879 |
tgctattggaatgattttggctaatgataagggttcaggcggtgagattatagatgacgctcatgtgcttcccgcttcacatgttagctttaaagatgga |
42761780 |
T |
|
| Q |
504 |
aacgtcatttttaaatatgtcaattacaccaagtaatttttctcccatgata |
555 |
Q |
| |
|
| | ||||||||||| |||||| |||| ||||||||||||||| |||||| |
|
|
| T |
42761779 |
gatttaatttttaaatacgtcaataacacaaagtaatttttctcctatgata |
42761728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 42762308 - 42762119
Alignment:
| Q |
29 |
tttatatctctaatttcctttgttattttaat-tctttagcaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaa |
127 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||| ||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| |
|
|
| T |
42762308 |
tttatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaa |
42762209 |
T |
|
| Q |
128 |
ttaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaatagcttttgc |
218 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| || |||| ||||||||||||| || | || |||||||||| |||||||| |
|
|
| T |
42762208 |
ttaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctgcagaggatgcgtaagaat-gcttttgc |
42762119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 310 - 552
Target Start/End: Original strand, 42735567 - 42735809
Alignment:
| Q |
310 |
ctcttgattctcataaagcaaagggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgt |
409 |
Q |
| |
|
|||||||| ||||||| ||| | ||||||||||||||||||||| |||| | ||||||| | |||| ||||| | ||||||||||| ||||||||| | |
|
|
| T |
42735567 |
ctcttgatcctcataaggcacatggaaaaatattggtatgtcttgaaggtgaaaatagtaaacttgaaaagggcatagaagcttctcgagtaggtgctat |
42735666 |
T |
|
| Q |
410 |
tggaatgattttggctaatgacgatttttcaggcggtgaaattatacctgacgctcatgtgcttcccgctccacatgttaactttaaagatggaaacgtc |
509 |
Q |
| |
|
||||||||| |||| || ||| ||||| || ||| ||||| |||| ||||| |||||||| ||| || ||||||| ||| ||||||| | |
|
|
| T |
42735667 |
tggaatgatcttggttattgagagggagtcagggggagaagttatagctgatgctcacgtgcttccagcttcaaatgttaatgttaccgatggaagttac |
42735766 |
T |
|
| Q |
510 |
atttttaaatatgtcaattacaccaagtaatttttctcccatg |
552 |
Q |
| |
|
|||||||| || | |||| | |||||||||||||||||||||| |
|
|
| T |
42735767 |
atttttaattacgccaataaaaccaagtaatttttctcccatg |
42735809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 42743265 - 42743211
Alignment:
| Q |
213 |
ttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaa |
267 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42743265 |
ttttgtgtagttgtccatcggcttgatcttgtaacctaaagtaacaaattttcaa |
42743211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 42752624 - 42752570
Alignment:
| Q |
213 |
ttttgcgtagttgtctatcggcttgatcttgtaacctaaagtaacaaattttcaa |
267 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42752624 |
ttttgtgtagttgtccatcggcttgatcttgtaacctaaagtaacaaattttcaa |
42752570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 42716486 - 42716436
Alignment:
| Q |
378 |
aagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaat |
428 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
42716486 |
aagggtgtggaagctgctcgtgtaggtgctgttggaattattttggctaat |
42716436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 428
Target Start/End: Complemental strand, 42768891 - 42768796
Alignment:
| Q |
333 |
ggaaaaatattggtatgtcttctaggtaacaatagtagagttgacaagggtgtggaagcttctcgtgtaggtgctgttggaatgattttggctaat |
428 |
Q |
| |
|
||||||||| | || ||||||| ||| ||||| |||| ||||||||||||| ||||| || | | |||||||||||||||||||||||||||| |
|
|
| T |
42768891 |
ggaaaaatagttgtttgtcttcgaggcgacaatgatagaactgacaagggtgtgcaagctgctagggcaggtgctgttggaatgattttggctaat |
42768796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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