View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_29 (Length: 267)
Name: NF13209_high_29
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 28014454 - 28014694
Alignment:
| Q |
11 |
aagaatataacatgaagaaagaacgtaaagttgttgacttattgtttcacaactggaggatttaatttcaaaattacacatactaaccaatattcatttg |
110 |
Q |
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| T |
28014454 |
aagaaaataacatcaagaaagaccgtaaagctgttgacttattgtttcacaactgaaggatttaatttcaaaattacacatactaaccaatattcatttg |
28014553 |
T |
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| Q |
111 |
cattttaactaaaagtttgcaaaccccgattcaaaagaatctcactctcatctaaggattcactcaccnnnnnnnccttctaatttcctagtataagctc |
210 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28014554 |
cattttaactgaaagtttgcacaccccgattcaaaagaatctcactctcatctaaggattcactcacctttttttccttctaatttcctagtataagctc |
28014653 |
T |
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| Q |
211 |
tcatctccacattttggcttcttctcccaggcacaatttgt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28014654 |
tcatctccacattttggcttcttctcccaggcacaatttgt |
28014694 |
T |
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