View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_31 (Length: 244)
Name: NF13209_high_31
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_31 |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 9389024 - 9389251
Alignment:
| Q |
1 |
ttgttttcagataaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattcc |
100 |
Q |
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| T |
9389024 |
ttgttttcagataaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtacaaacattcattcatacaattcc |
9389123 |
T |
|
| Q |
101 |
agggcttgaatattcttggcttaaaaatgaaaatgaaatcaagataacggtggaaaagacatggattaatgaggacaagctcagcttgagccatcatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389124 |
agggcttgaatattcttggcttaaaaatgaaaatgaaatcaaaataacggtggaaaagacatggattaatgaggacaagctcagcttgagccatcatcaa |
9389223 |
T |
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| Q |
201 |
ctacatctaaagaacgggccagacaact |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
9389224 |
ctacatctaaagaacgggccagacaact |
9389251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 19810430 - 19810358
Alignment:
| Q |
38 |
tgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaa |
110 |
Q |
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| T |
19810430 |
tgtgaatcttaagtcattataaataatatcatcaattgtacaaacattcaatcatacaattccagggcctgaa |
19810358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 31938680 - 31938898
Alignment:
| Q |
13 |
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaata |
112 |
Q |
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| T |
31938680 |
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagctgtacgaacattcattcatacaattccatggcctgaata |
31938779 |
T |
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| Q |
113 |
ttcttggcttaaaaatgaaaatgaaatcaagataacggtggaaaagacatggattaatgaggacaagctcagcttgagc---catcatcaactacatcta |
209 |
Q |
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| T |
31938780 |
ttcttggcttaaaaatgaaaatgaaatcaagataacggtggaaaagacatggatgaatgaggacaagctcagcttgagccatcatcatcaactacatcta |
31938879 |
T |
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| Q |
210 |
aagaacgggccagacaact |
228 |
Q |
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| T |
31938880 |
aagaatgggctagacaact |
31938898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 13534969 - 13535049
Alignment:
| Q |
21 |
caaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattcca |
101 |
Q |
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| T |
13534969 |
caaaatcatcaccaaagtgtgaatcataaatcattataaataatgtcatcaattgtacaaacattcaatcatacaattcca |
13535049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 32671548 - 32671582
Alignment:
| Q |
80 |
aacattcattcatacaattccagggcttgaatatt |
114 |
Q |
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| T |
32671548 |
aacattcattcatacaattccagggcctgaatatt |
32671582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 228
Target Start/End: Original strand, 1336890 - 1337067
Alignment:
| Q |
66 |
tcatcagttgtactaacattcattcatacaattccagggcttgaatattcttggcttaaaa------------atgaaaatgaaatcaagataacggtgg |
153 |
Q |
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|||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||| |||||||||||| | |
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| T |
1336890 |
tcatcagttgtaggaacattcattcatacaattccaggccctgaatattattggcttaaaaatgaaaacaaaaatgaaaatgaaaacaagataacggttg |
1336989 |
T |
|
| Q |
154 |
aaaagacatggattaatgaggacaagctcagcttgagccatcatc---aactacatctaaagaacgggccagacaact |
228 |
Q |
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| T |
1336990 |
aaaagacatggattaatgaggacaagatcaacttgaaccatcatcattaactacatctaaaggacgggctagacaact |
1337067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 5638938 - 5639158
Alignment:
| Q |
2 |
tgttttcagataaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattcca |
101 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||| || ||||| |||||||||||||||| |
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| T |
5638938 |
tgttttcaaataaatcttgcaaaatcatcaccgaagtgtgaatatt-------------taatgtcatcaattgaacaaacatccattcatacaattcca |
5639024 |
T |
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| Q |
102 |
gggcttgaatattcttggcttaaaaatgaaaatg----aaatcaagataacggtggaaaagacatggattaatgaggacaagctcagcttgagc---cat |
194 |
Q |
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| T |
5639025 |
gagcctgaatgctcttggcttaaaaatgaaaatggaagaaaaaaagataacaatggaaaagacatgaattaacgaggacaagctcaacttgaaccatcat |
5639124 |
T |
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| Q |
195 |
catcaactacatctaaagaacgggccagacaact |
228 |
Q |
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||||||||||| |||||| |||||| |||||||| |
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| T |
5639125 |
catcaactacagctaaaggacgggcaagacaact |
5639158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 10130 - 10041
Alignment:
| Q |
40 |
tgaatattaaatcattataaataatgtcatcagttgtactaacattcattc--atacaattccagggcttgaatattcttggcttaaaaa |
127 |
Q |
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| T |
10130 |
tgaatcttaaattattataaacaatgtcatcaattttgcaaccattcattcatatacaattccagggcctgaatactcttagcttcaaaa |
10041 |
T |
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