View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_34 (Length: 230)
Name: NF13209_high_34
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 52369646 - 52369465
Alignment:
| Q |
35 |
actaaatacataactaactagttt--caaagttaattgagtacacttattggaggctaactatgaaactttactatacgatgatgacagatatcataatt |
132 |
Q |
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| T |
52369646 |
actaaatacataactaactagtttttcaaagttaattgagtacacttattggaggctaactatgaaactttactatacgatgatgacagatatcataatt |
52369547 |
T |
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| Q |
133 |
tgttgaacaaatgaatgcaattatttggttttgaccaatataataaatattcaactactatatggcatggctgctaatttat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52369546 |
tgttgaacaaatgaatgcaattatttggttttgaccaatataataaatattcaactactatatggcatggctgctaatttat |
52369465 |
T |
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