View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_38 (Length: 201)
Name: NF13209_high_38
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 47807443 - 47807626
Alignment:
| Q |
1 |
tttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgtcttgttttactg |
100 |
Q |
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| T |
47807443 |
tttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgtcttgttttactg |
47807542 |
T |
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| Q |
101 |
acagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgatacatgt |
184 |
Q |
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| T |
47807543 |
acagcaagaatgcgaggatttgcggcaaaaagtgaatactggcttgtttccgaaaataactgttgtaagttgtatgatacatgt |
47807626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 47804883 - 47805063
Alignment:
| Q |
3 |
tctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactat-attttcctggaatacatattaattgtcttgttttactga |
101 |
Q |
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||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||| |||||||||| |||||||||| | |
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| T |
47804883 |
tctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatcctggaatacgtattaattgtgttgttttactta |
47804982 |
T |
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| Q |
102 |
cagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgatacat |
182 |
Q |
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| T |
47804983 |
cagcaagattgtgaggatttacggaaaaaagtgaaaactggattgctcccaaaattaactgttgtaagttgtatgatacat |
47805063 |
T |
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