View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_8 (Length: 488)
Name: NF13209_high_8
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 40754112 - 40754583
Alignment:
| Q |
16 |
ttttatcggtagttgtcccaaccaactttttgagacccgagtctggagtagtagcaatttctggggagtttgaaccccttctttcaatactgttgtctaa |
115 |
Q |
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| T |
40754112 |
ttttatctgtagttgtcccaaccaactttttgagacccgagtccggagtagtagcaatttctggggagtttgaaccccttctttcaatactgttgtctaa |
40754211 |
T |
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| Q |
116 |
tgttatgcactcctccttgnnnnnnnaattttggacaagagttatgttctcgtaacttctccacct----taaaattttagtcattgtaaattggctttt |
211 |
Q |
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| T |
40754212 |
tgttatgcactcctccttgtttttttaattttggacaagagttatgttctcataacttctccaccttaaataaaattctagtcattgtaaattggctttt |
40754311 |
T |
|
| Q |
212 |
gtcatagggcaatgtagctccaaagtaagtttctaattcgacatattttagacactacattagctactc-----------gtgtctgcgtttgatcaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
40754312 |
gtcatagggcaatgtagctccaaagtaagtttttaattcgacatattttagacactacattagcaactcattgatattcggtgtctgcgtttgatcaaga |
40754411 |
T |
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| Q |
301 |
caacatatgttgtcttttcacgaactacaacattaaattatcactaaaatatacataataacccgagatagattcaagtgtatgaaaatctagcccaata |
400 |
Q |
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| T |
40754412 |
caacacatgttgtctttttacgaactacgacattaaattatcactaaaatatacataataacccgagatagattcaagtgtatgaaaatctagcccaata |
40754511 |
T |
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| Q |
401 |
tgtgtctctataagagacgagcttgtcgagggaggagggatacatatggaggtcaaactcaatggtaccatg |
472 |
Q |
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| T |
40754512 |
tgtgtctttataagagacgagcttgtcgagggaggagggatacatagggaggtcaaactcaatggtaccatg |
40754583 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 463
Target Start/End: Original strand, 5417279 - 5417328
Alignment:
| Q |
414 |
gagacgagcttgtcgagggaggagggatacatatggaggtcaaactcaat |
463 |
Q |
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| T |
5417279 |
gagaggagcttgtcgagggaggagggatacatttggaggccagactcaat |
5417328 |
T |
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