View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_high_9 (Length: 480)
Name: NF13209_high_9
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 27173429 - 27173908
Alignment:
| Q |
1 |
agaaatagtttctcttacacaaattatgtgctagtcctgttgtagggactaattggatactcgagagtgtatcgagttttcttgtagttgagattaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27173429 |
agaaatagtttctcttacacaaattatgtgctagtcatgttgtagggactagttggatactcaagagtgtatcgagttttcttgtagttgagattaagtg |
27173528 |
T |
|
| Q |
101 |
tggcatgtatctgctttgtgtttgcctgagactgttgcatcgaaaacctggttactgaaatggctaacatgtaagttttctgtgcaactctagggatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27173529 |
tggcatgtatctgctttgtgtttgcctgagactgttgcatcgaaaacctggttactgaaatggctaacatgtaagttttctgtgtaactctagggatgat |
27173628 |
T |
|
| Q |
201 |
atggtttggaaggaccaaattgtgttgaaatagctaacatgtaggttctctgtgcaagtctagggaagatatggtttgaaaggaccaaattgtgttcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27173629 |
atggtttggaaggaccaaattgtgttgaaataactaacatgtaggttttctgtgcaagtctagggaagatatggtttgaaaagaccaaattgtgttcaaa |
27173728 |
T |
|
| Q |
301 |
ctaaaatttctcaattcagtggacgtggctagaagcgctgaagaatatgttgttgacttcaaccaggcaaatctga-aagacaaatgcaaggaagtatgt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
27173729 |
ctaaaatttctcaattcagtggacgtggctagaagcgctgaagaatatgttgttgacttcaaccaggcaaatctgagaagagaaatgcaaggaagtatgt |
27173828 |
T |
|
| Q |
400 |
agcagaaccggttcaggagcagtcttgacaccgtacctcaagtgcatgctatagtcatatcatgtgttataagaaaccag |
479 |
Q |
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||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
27173829 |
agcagaaccagttgagtagcagtcttgacactgtacctcaagtgcatgctatagtcatatcatgtgtttttagaaaccag |
27173908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 27230234 - 27230713
Alignment:
| Q |
1 |
agaaatagtttctcttacacaaattatgtgctagtcctgttgtagggactaattggatactcgagagtgtatcgagttttcttgtagttgagattaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27230234 |
agaaatagtttctcttacacaaattatgtgctagtcatgttgtagggactagttggatactcaagagtgtatcgagttttcttgtagttgagattaagtg |
27230333 |
T |
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| Q |
101 |
tggcatgtatctgctttgtgtttgcctgagactgttgcatcgaaaacctggttactgaaatggctaacatgtaagttttctgtgcaactctagggatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27230334 |
tggcatgtatctgctttgtgtttgcctgagactgttgcatcgaaaacctggttactgaaatggctaacatgtaagttttctgtgtaactctagggatgat |
27230433 |
T |
|
| Q |
201 |
atggtttggaaggaccaaattgtgttgaaatagctaacatgtaggttctctgtgcaagtctagggaagatatggtttgaaaggaccaaattgtgttcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27230434 |
atggtttggaaggaccaaattgtgttgaaataactaacatgtaggttttctgtgcaagtctagggaagatatggtttgaaaagaccaaattgtgttcaaa |
27230533 |
T |
|
| Q |
301 |
ctaaaatttctcaattcagtggacgtggctagaagcgctgaagaatatgttgttgacttcaaccaggcaaatctga-aagacaaatgcaaggaagtatgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
27230534 |
ctaaaatttctcaattcagtggacgtggctagaagcgctgaagaatatgttgttgacttcaaccaggcaaatctgagaagagaaatgcaaggaagtatgt |
27230633 |
T |
|
| Q |
400 |
agcagaaccggttcaggagcagtcttgacaccgtacctcaagtgcatgctatagtcatatcatgtgttataagaaaccag |
479 |
Q |
| |
|
||||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
27230634 |
agcagaaccagttgagtagcagtcttgacactgtacctcaagtgcatgctatagtcatatcatgtgtttttagaaaccag |
27230713 |
T |
|
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