View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_13 (Length: 414)
Name: NF13209_low_13
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 33824386 - 33824781
Alignment:
| Q |
1 |
acagtggaatccaagaactgtaccagaaactaaggtcatcaacaactttccctagtaacagtgttggtgatatttcatcttcaccaacggtattactagg |
100 |
Q |
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| T |
33824386 |
acagtggaatccaagaactgtaccagaaactaaggtcatcaacaactttccctagtaacagtgttggtgatatttcatcttcaccaacggtattactagg |
33824485 |
T |
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| Q |
101 |
gaacgcggcttcaaattcttcgtctatatccaacattttggagacaacttcagttactggtggtgaattagggtactggaatccaattccaacccttact |
200 |
Q |
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| T |
33824486 |
gaacgcggcttcaaattcttcgtctatatccaacattttggagacaacttcagttactggtggtgaattagggtactggaatccaattccaacccttact |
33824585 |
T |
|
| Q |
201 |
tggtctgatcttccaactaccaatggtgcaattcaaacccaatatcagtaataagtgtaactacgtgttctttttcttttgttgaccggtcaaatcttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33824586 |
tggtctgatcttccaactaccaatggtgcaattcaaacccaatatcagtaataagtgtaactacgtgttctttttcttttgttgaccggtcaaatcttct |
33824685 |
T |
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| Q |
301 |
tttaccattacatagtagcataggttttgctccttaattctatcttagagtttgtannnnnnnnngtgtgtttggttttggtttgggtggtatatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33824686 |
tttaccattacatagtagcataggttttgctccttaattctatcttagagtttgtatttttttgtgtgtgtttggttttggtttgggtggtatatg |
33824781 |
T |
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