View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_16 (Length: 379)
Name: NF13209_low_16
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43093301 - 43093656
Alignment:
| Q |
1 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaagct |
100 |
Q |
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| T |
43093301 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaggct |
43093400 |
T |
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| Q |
101 |
tgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaattcaatga |
200 |
Q |
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| T |
43093401 |
tgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaattcaatga |
43093500 |
T |
|
| Q |
201 |
tgtccattaaaacttttgacgtctacatatttaagacaagtatggggaagctttaactatgtaggatatacaattttgaagttttaataaaatgtgatgt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43093501 |
tgtccattaaaactttagacgtctacatatttaagacaagtatgaggaagctttaactatgtaggatatagaattttgaagttttaataaaatgtgatgt |
43093600 |
T |
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| Q |
301 |
cgtcacatggaagaaacagatacatggaataaacatgctagtaacaatcaccacgg |
356 |
Q |
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| T |
43093601 |
cgtcacatggaagaaacagatacatggaagaaacatgctagtaacaatcaccacgg |
43093656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 43085348 - 43085534
Alignment:
| Q |
1 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaagct |
100 |
Q |
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||||| || ||||||||||| || || ||||||||||| | ||||| ||||||||||||| ||| |||||||| | || ||||||||||||||| || |
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| T |
43085348 |
tagaagccgacagaattgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagcct |
43085447 |
T |
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| Q |
101 |
tgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcat |
187 |
Q |
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| T |
43085448 |
tgtgctcgaagaatctcattttgagtgccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcat |
43085534 |
T |
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