View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_18 (Length: 370)
Name: NF13209_low_18
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 4655724 - 4655998
Alignment:
| Q |
40 |
tggattaaggtgttctattaattggtgatagatggattggactctattctcatgagcttaagtggtaacatttactcactacatttctacacttgatatc |
139 |
Q |
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| T |
4655724 |
tggattaaggtgttctactaattggtgatagatggattggactctattctcatgagcttaagtggtaatatttactcactacatttctacacttgatatc |
4655823 |
T |
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| Q |
140 |
ttcgaactgttttgcatttctctcacatttttgtttgagtgtgtattttcttttgaacgtaattatgtgccacaaatataggcgagtttgtgtagcatga |
239 |
Q |
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| T |
4655824 |
ttcgaactgttttgcatttctctcacatttttgtttgagtgtgtattttcttttgaacgtaattatgtgccacaaatataggcgagtttgtgtagcatga |
4655923 |
T |
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| Q |
240 |
ccgacatataatttttcttttaaaacaaatatatgtgctgtcaatttttagcaccacaaatgattcccatcacgtg |
315 |
Q |
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||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4655924 |
ccgacatat-atttttttttaaaaacaaatatatgtgctgtcaatttttagcaccacaaatgattcccatcacgtg |
4655998 |
T |
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